miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24823 5' -57.5 NC_005284.1 + 54068 0.67 0.525282
Target:  5'- cGGCAgcaguucaaucAGUGCGAgcUUuCGCUCGGCc -3'
miRNA:   3'- aCCGU-----------UCGCGCUguAGuGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 53699 0.66 0.566882
Target:  5'- cGGCAAGUGCgcuggcgaucuuaGACAgCACG-UCGGUa -3'
miRNA:   3'- aCCGUUCGCG-------------CUGUaGUGCgAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 53103 0.74 0.202687
Target:  5'- gGGCAaauccGGCGCGcuACAUCACGCcucgcaCGGCg -3'
miRNA:   3'- aCCGU-----UCGCGC--UGUAGUGCGa-----GCCGa -5'
24823 5' -57.5 NC_005284.1 + 52992 0.67 0.514796
Target:  5'- aGGCAAuCGCGguggGCAUCGCGUUUGccGCUg -3'
miRNA:   3'- aCCGUUcGCGC----UGUAGUGCGAGC--CGA- -5'
24823 5' -57.5 NC_005284.1 + 49272 0.67 0.504395
Target:  5'- aGGCGA-CGUGACGaagCGCGCUucaCGGCc -3'
miRNA:   3'- aCCGUUcGCGCUGUa--GUGCGA---GCCGa -5'
24823 5' -57.5 NC_005284.1 + 48061 0.69 0.370445
Target:  5'- aGGCcGGUGCGcugcGCAUUACGCgcCGGCc -3'
miRNA:   3'- aCCGuUCGCGC----UGUAGUGCGa-GCCGa -5'
24823 5' -57.5 NC_005284.1 + 47806 0.73 0.231149
Target:  5'- gGGCGAGCGCuuGGCggCGCugcgauggguGCUCGGCa -3'
miRNA:   3'- aCCGUUCGCG--CUGuaGUG----------CGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 47751 0.67 0.484891
Target:  5'- cGGCGGcGCGCGuACGUC-CGCguaagcagaucgaggCGGCg -3'
miRNA:   3'- aCCGUU-CGCGC-UGUAGuGCGa--------------GCCGa -5'
24823 5' -57.5 NC_005284.1 + 47714 0.66 0.535849
Target:  5'- cGGCAAGCcgauCGGCGUCggugaACG-UCGGCg -3'
miRNA:   3'- aCCGUUCGc---GCUGUAG-----UGCgAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 47708 0.68 0.424909
Target:  5'- gGGCAcGCGCGcucGCGUgCGCagaaggccguGCUCGGCg -3'
miRNA:   3'- aCCGUuCGCGC---UGUA-GUG----------CGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 45791 0.71 0.305586
Target:  5'- uUGcGCAGGCGuCGGCA---UGCUCGGCg -3'
miRNA:   3'- -AC-CGUUCGC-GCUGUaguGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 45644 0.66 0.546489
Target:  5'- gGGCAGGCugGCGGCucGUCgguGCGCgaggCGGUg -3'
miRNA:   3'- aCCGUUCG--CGCUG--UAG---UGCGa---GCCGa -5'
24823 5' -57.5 NC_005284.1 + 45204 0.7 0.361843
Target:  5'- cGGC-AGCGCGAUcgCccuGCGCuUUGGCg -3'
miRNA:   3'- aCCGuUCGCGCUGuaG---UGCG-AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 45146 0.73 0.219379
Target:  5'- gGGCAAG-GCGugGUCgACGCaCGGCg -3'
miRNA:   3'- aCCGUUCgCGCugUAG-UGCGaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 45071 0.77 0.127645
Target:  5'- gGGCGAGCGCGGCuaCGCGCUCGu-- -3'
miRNA:   3'- aCCGUUCGCGCUGuaGUGCGAGCcga -5'
24823 5' -57.5 NC_005284.1 + 44915 0.7 0.34506
Target:  5'- gGGCGGGUGCGaaucacucGCAcCGCGCcUCGGUg -3'
miRNA:   3'- aCCGUUCGCGC--------UGUaGUGCG-AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 44879 0.7 0.33688
Target:  5'- cUGcGCGAGCGCGAgCG--ACGCUuCGGCg -3'
miRNA:   3'- -AC-CGUUCGCGCU-GUagUGCGA-GCCGa -5'
24823 5' -57.5 NC_005284.1 + 44754 1.07 0.000746
Target:  5'- gUGGCAAGCGCGACAUCACGCUCGGCUu -3'
miRNA:   3'- -ACCGUUCGCGCUGUAGUGCGAGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 40171 0.68 0.444098
Target:  5'- aGGUAGcGCGCGA----GCGUUCGGCg -3'
miRNA:   3'- aCCGUU-CGCGCUguagUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 39603 0.66 0.535849
Target:  5'- -cGCGAGCGCGAa--CugGUcggUCGGCa -3'
miRNA:   3'- acCGUUCGCGCUguaGugCG---AGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.