Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 37861 | 1.08 | 0.000639 |
Target: 5'- gCGCGGCAGCUCGAUCCGAUGCGAGCGc -3' miRNA: 3'- -GCGCCGUCGAGCUAGGCUACGCUCGC- -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 48832 | 0.76 | 0.143173 |
Target: 5'- aCGC-GUGGCUCGA-CUGGUGCGAGCa -3' miRNA: 3'- -GCGcCGUCGAGCUaGGCUACGCUCGc -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 21297 | 0.74 | 0.181081 |
Target: 5'- uGCGGCAGCacaacggcgaggCGGUUCaAUGCGGGCGa -3' miRNA: 3'- gCGCCGUCGa-----------GCUAGGcUACGCUCGC- -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 7649 | 0.74 | 0.186892 |
Target: 5'- aGCGGguGCUUcgGGUCCG-UGaCGAGCGu -3' miRNA: 3'- gCGCCguCGAG--CUAGGCuAC-GCUCGC- -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 45201 | 0.73 | 0.202142 |
Target: 5'- cCGCGGCAGCgCGAUCgcccugCGcuuugGCGAGCGc -3' miRNA: 3'- -GCGCCGUCGaGCUAG------GCua---CGCUCGC- -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 32983 | 0.73 | 0.207461 |
Target: 5'- gGCGGCGGUcacUCGcUCCGcaGCGGGCGa -3' miRNA: 3'- gCGCCGUCG---AGCuAGGCuaCGCUCGC- -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 36078 | 0.73 | 0.2129 |
Target: 5'- uGCGaG-AGCUUGAuuucgUCCGGUGCGGGCGc -3' miRNA: 3'- gCGC-CgUCGAGCU-----AGGCUACGCUCGC- -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 46552 | 0.72 | 0.241957 |
Target: 5'- -aCGGCAGUUCGGgcgaUCCGAUGUugccGAGCa -3' miRNA: 3'- gcGCCGUCGAGCU----AGGCUACG----CUCGc -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 49643 | 0.72 | 0.254476 |
Target: 5'- aGCGGCguuccgacGGUUCGAU-CGA-GCGAGCGg -3' miRNA: 3'- gCGCCG--------UCGAGCUAgGCUaCGCUCGC- -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 45649 | 0.71 | 0.267521 |
Target: 5'- gGCuGGCGGCUCG--UCGGUGCGcgaGGCGg -3' miRNA: 3'- gCG-CCGUCGAGCuaGGCUACGC---UCGC- -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 8249 | 0.71 | 0.295224 |
Target: 5'- gCGCuGCGGCUCGGcaagacguuggCCGAgcugUGCGAGCa -3' miRNA: 3'- -GCGcCGUCGAGCUa----------GGCU----ACGCUCGc -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 19462 | 0.69 | 0.365543 |
Target: 5'- uGCGGCAgGCgcuGAU-CGGUGCGGGCu -3' miRNA: 3'- gCGCCGU-CGag-CUAgGCUACGCUCGc -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 54066 | 0.69 | 0.374036 |
Target: 5'- uGCGGCAGCaguUCaAUCa-GUGCGAGCu -3' miRNA: 3'- gCGCCGUCG---AGcUAGgcUACGCUCGc -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 33234 | 0.69 | 0.391417 |
Target: 5'- gCGCGGCcuGCUCGucggcaagCCGAUGUGcGCc -3' miRNA: 3'- -GCGCCGu-CGAGCua------GGCUACGCuCGc -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 41600 | 0.69 | 0.391417 |
Target: 5'- aCGCGcGCgaGGC-CGcgCCGAgUGCGAGCu -3' miRNA: 3'- -GCGC-CG--UCGaGCuaGGCU-ACGCUCGc -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 47307 | 0.68 | 0.409317 |
Target: 5'- aCGCGcGCgAGCUgaaccgucaacUGAU-CGAUGCGGGCGa -3' miRNA: 3'- -GCGC-CG-UCGA-----------GCUAgGCUACGCUCGC- -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 20827 | 0.68 | 0.427719 |
Target: 5'- cCGCaGCAGCgcCGG-CCGAcgaGCGGGCGg -3' miRNA: 3'- -GCGcCGUCGa-GCUaGGCUa--CGCUCGC- -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 12752 | 0.68 | 0.443738 |
Target: 5'- aCGCGGCGaagguugccGCgaucaucgauuuccUCGAUCgGcAUGCGGGCGc -3' miRNA: 3'- -GCGCCGU---------CG--------------AGCUAGgC-UACGCUCGC- -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 33132 | 0.68 | 0.446601 |
Target: 5'- aCGCGGCGGCaUCG-UgCGcgGCGAucGCa -3' miRNA: 3'- -GCGCCGUCG-AGCuAgGCuaCGCU--CGc -5' |
|||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 24397 | 0.68 | 0.456214 |
Target: 5'- gGCGGCAaUUCGAUCggCGGUGggaaGAGCGu -3' miRNA: 3'- gCGCCGUcGAGCUAG--GCUACg---CUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home