miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24843 5' -58.5 NC_005284.1 + 33447 0.66 0.547161
Target:  5'- gCGCGGUAG-UCGAUCCGcaGUGCuuacacGCGc -3'
miRNA:   3'- -GCGCCGUCgAGCUAGGC--UACGcu----CGC- -5'
24843 5' -58.5 NC_005284.1 + 21623 0.68 0.456214
Target:  5'- uCGCGcGCcgcGCUCGAcgCCGAgcaGCGuGCGa -3'
miRNA:   3'- -GCGC-CGu--CGAGCUa-GGCUa--CGCuCGC- -5'
24843 5' -58.5 NC_005284.1 + 24397 0.68 0.456214
Target:  5'- gGCGGCAaUUCGAUCggCGGUGggaaGAGCGu -3'
miRNA:   3'- gCGCCGUcGAGCUAG--GCUACg---CUCGC- -5'
24843 5' -58.5 NC_005284.1 + 27994 0.67 0.475768
Target:  5'- gCGCGauguuGCAGCUCuAUCCc--GCGGGCGa -3'
miRNA:   3'- -GCGC-----CGUCGAGcUAGGcuaCGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 11257 0.67 0.516062
Target:  5'- aCGCGGCagcGGCUCGcgCggCGAagGgGGGCGg -3'
miRNA:   3'- -GCGCCG---UCGAGCuaG--GCUa-CgCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 13361 0.67 0.516062
Target:  5'- gGCGGCaAGCUgacggugggcggCGAUCUGucUGCG-GCGg -3'
miRNA:   3'- gCGCCG-UCGA------------GCUAGGCu-ACGCuCGC- -5'
24843 5' -58.5 NC_005284.1 + 47785 0.67 0.516062
Target:  5'- gGCGGC-GCUCGcggaggCGAcggGCGAGCGc -3'
miRNA:   3'- gCGCCGuCGAGCuag---GCUa--CGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 10642 0.66 0.536722
Target:  5'- aGCGGCGGCgaagcgcugcgCGAggaaCUGGUGCGcgccGCGg -3'
miRNA:   3'- gCGCCGUCGa----------GCUa---GGCUACGCu---CGC- -5'
24843 5' -58.5 NC_005284.1 + 7370 0.66 0.547161
Target:  5'- aCGCGGCcgaucuGGCguucgUCGAUCUGAgUGCGAcggGCa -3'
miRNA:   3'- -GCGCCG------UCG-----AGCUAGGCU-ACGCU---CGc -5'
24843 5' -58.5 NC_005284.1 + 12752 0.68 0.443738
Target:  5'- aCGCGGCGaagguugccGCgaucaucgauuuccUCGAUCgGcAUGCGGGCGc -3'
miRNA:   3'- -GCGCCGU---------CG--------------AGCUAGgC-UACGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 47307 0.68 0.409317
Target:  5'- aCGCGcGCgAGCUgaaccgucaacUGAU-CGAUGCGGGCGa -3'
miRNA:   3'- -GCGC-CG-UCGA-----------GCUAgGCUACGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 41600 0.69 0.391417
Target:  5'- aCGCGcGCgaGGC-CGcgCCGAgUGCGAGCu -3'
miRNA:   3'- -GCGC-CG--UCGaGCuaGGCU-ACGCUCGc -5'
24843 5' -58.5 NC_005284.1 + 21297 0.74 0.181081
Target:  5'- uGCGGCAGCacaacggcgaggCGGUUCaAUGCGGGCGa -3'
miRNA:   3'- gCGCCGUCGa-----------GCUAGGcUACGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 32983 0.73 0.207461
Target:  5'- gGCGGCGGUcacUCGcUCCGcaGCGGGCGa -3'
miRNA:   3'- gCGCCGUCG---AGCuAGGCuaCGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 36078 0.73 0.2129
Target:  5'- uGCGaG-AGCUUGAuuucgUCCGGUGCGGGCGc -3'
miRNA:   3'- gCGC-CgUCGAGCU-----AGGCUACGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 46552 0.72 0.241957
Target:  5'- -aCGGCAGUUCGGgcgaUCCGAUGUugccGAGCa -3'
miRNA:   3'- gcGCCGUCGAGCU----AGGCUACG----CUCGc -5'
24843 5' -58.5 NC_005284.1 + 49643 0.72 0.254476
Target:  5'- aGCGGCguuccgacGGUUCGAU-CGA-GCGAGCGg -3'
miRNA:   3'- gCGCCG--------UCGAGCUAgGCUaCGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 45649 0.71 0.267521
Target:  5'- gGCuGGCGGCUCG--UCGGUGCGcgaGGCGg -3'
miRNA:   3'- gCG-CCGUCGAGCuaGGCUACGC---UCGC- -5'
24843 5' -58.5 NC_005284.1 + 8249 0.71 0.295224
Target:  5'- gCGCuGCGGCUCGGcaagacguuggCCGAgcugUGCGAGCa -3'
miRNA:   3'- -GCGcCGUCGAGCUa----------GGCU----ACGCUCGc -5'
24843 5' -58.5 NC_005284.1 + 19462 0.69 0.365543
Target:  5'- uGCGGCAgGCgcuGAU-CGGUGCGGGCu -3'
miRNA:   3'- gCGCCGU-CGag-CUAgGCUACGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.