miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24843 5' -58.5 NC_005284.1 + 684 0.66 0.568221
Target:  5'- cCGaUGGaAGUUCGAUCCGGaggcgGCcGAGCGa -3'
miRNA:   3'- -GC-GCCgUCGAGCUAGGCUa----CG-CUCGC- -5'
24843 5' -58.5 NC_005284.1 + 927 0.67 0.49573
Target:  5'- gGCcGCuguGCUCGAUgCUGAacugGCGGGCGa -3'
miRNA:   3'- gCGcCGu--CGAGCUA-GGCUa---CGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 7370 0.66 0.547161
Target:  5'- aCGCGGCcgaucuGGCguucgUCGAUCUGAgUGCGAcggGCa -3'
miRNA:   3'- -GCGCCG------UCG-----AGCUAGGCU-ACGCU---CGc -5'
24843 5' -58.5 NC_005284.1 + 7649 0.74 0.186892
Target:  5'- aGCGGguGCUUcgGGUCCG-UGaCGAGCGu -3'
miRNA:   3'- gCGCCguCGAG--CUAGGCuAC-GCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 8249 0.71 0.295224
Target:  5'- gCGCuGCGGCUCGGcaagacguuggCCGAgcugUGCGAGCa -3'
miRNA:   3'- -GCGcCGUCGAGCUa----------GGCU----ACGCUCGc -5'
24843 5' -58.5 NC_005284.1 + 9634 0.66 0.568221
Target:  5'- aGCGGCGGaggcuucagCGcaggCCGAgcucgcgggcaUGCGAGCGa -3'
miRNA:   3'- gCGCCGUCga-------GCua--GGCU-----------ACGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 10642 0.66 0.536722
Target:  5'- aGCGGCGGCgaagcgcugcgCGAggaaCUGGUGCGcgccGCGg -3'
miRNA:   3'- gCGCCGUCGa----------GCUa---GGCUACGCu---CGC- -5'
24843 5' -58.5 NC_005284.1 + 11257 0.67 0.516062
Target:  5'- aCGCGGCagcGGCUCGcgCggCGAagGgGGGCGg -3'
miRNA:   3'- -GCGCCG---UCGAGCuaG--GCUa-CgCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 12752 0.68 0.443738
Target:  5'- aCGCGGCGaagguugccGCgaucaucgauuuccUCGAUCgGcAUGCGGGCGc -3'
miRNA:   3'- -GCGCCGU---------CG--------------AGCUAGgC-UACGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 13361 0.67 0.516062
Target:  5'- gGCGGCaAGCUgacggugggcggCGAUCUGucUGCG-GCGg -3'
miRNA:   3'- gCGCCG-UCGA------------GCUAGGCu-ACGCuCGC- -5'
24843 5' -58.5 NC_005284.1 + 19462 0.69 0.365543
Target:  5'- uGCGGCAgGCgcuGAU-CGGUGCGGGCu -3'
miRNA:   3'- gCGCCGU-CGag-CUAgGCUACGCUCGc -5'
24843 5' -58.5 NC_005284.1 + 19936 0.66 0.547161
Target:  5'- cCGCGacgguaauaGCAGCaaUCGAcgCCGGUGcCGGGCu -3'
miRNA:   3'- -GCGC---------CGUCG--AGCUa-GGCUAC-GCUCGc -5'
24843 5' -58.5 NC_005284.1 + 20827 0.68 0.427719
Target:  5'- cCGCaGCAGCgcCGG-CCGAcgaGCGGGCGg -3'
miRNA:   3'- -GCGcCGUCGa-GCUaGGCUa--CGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 21164 0.66 0.547161
Target:  5'- cCGCGcGCGGCUCGAgcaaCGGcucauCGAGCa -3'
miRNA:   3'- -GCGC-CGUCGAGCUag--GCUac---GCUCGc -5'
24843 5' -58.5 NC_005284.1 + 21297 0.74 0.181081
Target:  5'- uGCGGCAGCacaacggcgaggCGGUUCaAUGCGGGCGa -3'
miRNA:   3'- gCGCCGUCGa-----------GCUAGGcUACGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 21525 0.66 0.547161
Target:  5'- gCGCGGCAGCaUCGc-CCacUGCGgaGGCGg -3'
miRNA:   3'- -GCGCCGUCG-AGCuaGGcuACGC--UCGC- -5'
24843 5' -58.5 NC_005284.1 + 21623 0.68 0.456214
Target:  5'- uCGCGcGCcgcGCUCGAcgCCGAgcaGCGuGCGa -3'
miRNA:   3'- -GCGC-CGu--CGAGCUa-GGCUa--CGCuCGC- -5'
24843 5' -58.5 NC_005284.1 + 24397 0.68 0.456214
Target:  5'- gGCGGCAaUUCGAUCggCGGUGggaaGAGCGu -3'
miRNA:   3'- gCGCCGUcGAGCUAG--GCUACg---CUCGC- -5'
24843 5' -58.5 NC_005284.1 + 27994 0.67 0.475768
Target:  5'- gCGCGauguuGCAGCUCuAUCCc--GCGGGCGa -3'
miRNA:   3'- -GCGC-----CGUCGAGcUAGGcuaCGCUCGC- -5'
24843 5' -58.5 NC_005284.1 + 32983 0.73 0.207461
Target:  5'- gGCGGCGGUcacUCGcUCCGcaGCGGGCGa -3'
miRNA:   3'- gCGCCGUCG---AGCuAGGCuaCGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.