miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24844 3' -63.9 NC_005284.1 + 16517 0.66 0.349856
Target:  5'- --aAUGCGUCUuguGCCGGgcgcgCUGGCGGCa -3'
miRNA:   3'- gccUACGCGGG---CGGCUa----GGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 27121 0.66 0.349856
Target:  5'- ----cGCGCCaCGCCGGcCCGuauaGCGGCg -3'
miRNA:   3'- gccuaCGCGG-GCGGCUaGGC----CGCCGg -5'
24844 3' -63.9 NC_005284.1 + 33206 0.66 0.349856
Target:  5'- uCGGcAUGCcgcuGCgCGUCGAacgcCCGcGCGGCCu -3'
miRNA:   3'- -GCC-UACG----CGgGCGGCUa---GGC-CGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 39118 0.66 0.349856
Target:  5'- cCGaGAUacaCGCCCGCgUGAUUCGGCacGCCg -3'
miRNA:   3'- -GC-CUAc--GCGGGCG-GCUAGGCCGc-CGG- -5'
24844 3' -63.9 NC_005284.1 + 46024 0.66 0.342085
Target:  5'- -uGAUGCacGCCgaaCGCCGcUgCGGCGGCUu -3'
miRNA:   3'- gcCUACG--CGG---GCGGCuAgGCCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 8099 0.66 0.342085
Target:  5'- -cGAUGCaaCCG-CGGUCgCGGCGGCg -3'
miRNA:   3'- gcCUACGcgGGCgGCUAG-GCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 47784 0.66 0.327666
Target:  5'- aGGcgGCGCUCGCgGAggcgacgggcgagcgCuUGGCGGCg -3'
miRNA:   3'- gCCuaCGCGGGCGgCUa--------------G-GCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 33947 0.66 0.32692
Target:  5'- gCGGAaGCgccGCCCGCuCGucggCCGGCGcuGCUg -3'
miRNA:   3'- -GCCUaCG---CGGGCG-GCua--GGCCGC--CGG- -5'
24844 3' -63.9 NC_005284.1 + 14954 0.66 0.32692
Target:  5'- uGGcGUGaauaaCGCgCGCCG-UUCGGCGGCUu -3'
miRNA:   3'- gCC-UAC-----GCGgGCGGCuAGGCCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 22114 0.66 0.32692
Target:  5'- gCGGuccgcugGCcCCCGCCGAUgCgggagaGGCGGCa -3'
miRNA:   3'- -GCCua-----CGcGGGCGGCUAgG------CCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 5690 0.66 0.322468
Target:  5'- aGGuUGa-CCCGCCgGAuucgcacguggcagcUCCGGCGGCg -3'
miRNA:   3'- gCCuACgcGGGCGG-CU---------------AGGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 17493 0.66 0.319526
Target:  5'- cCGGGUcgguggucGCGUCgGCCGAuaugccguccgaUCCGGUcuaccuguacacGGCCg -3'
miRNA:   3'- -GCCUA--------CGCGGgCGGCU------------AGGCCG------------CCGG- -5'
24844 3' -63.9 NC_005284.1 + 38095 0.66 0.305117
Target:  5'- uCGGAcgucaGCGgCaCGCCGAcgCCGGCcucacgcucgacGGCCg -3'
miRNA:   3'- -GCCUa----CGCgG-GCGGCUa-GGCCG------------CCGG- -5'
24844 3' -63.9 NC_005284.1 + 46585 0.66 0.305117
Target:  5'- uGGcgGCGCagugggcaaCGCCGAacgucCCGaGCGGCg -3'
miRNA:   3'- gCCuaCGCGg--------GCGGCUa----GGC-CGCCGg -5'
24844 3' -63.9 NC_005284.1 + 10169 0.67 0.297407
Target:  5'- -uGAUGCGCUCGguugguuCCGGcuugCUGGCGGCg -3'
miRNA:   3'- gcCUACGCGGGC-------GGCUa---GGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 31430 0.67 0.291212
Target:  5'- gCGGgcGaCGUgCGCCGcUgCGGCGcGCCg -3'
miRNA:   3'- -GCCuaC-GCGgGCGGCuAgGCCGC-CGG- -5'
24844 3' -63.9 NC_005284.1 + 42026 0.67 0.291212
Target:  5'- uCGcGA-GCGCgUGCCGG-CCGaGCGGCa -3'
miRNA:   3'- -GC-CUaCGCGgGCGGCUaGGC-CGCCGg -5'
24844 3' -63.9 NC_005284.1 + 19027 0.67 0.277808
Target:  5'- aGGcgGCGaUCGCCGAgggcgauaUGGCGGUCg -3'
miRNA:   3'- gCCuaCGCgGGCGGCUag------GCCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 10670 0.67 0.277808
Target:  5'- -uGGUGCGCgCCGCgggcgCGAUCgacaCGGCgGGCCu -3'
miRNA:   3'- gcCUACGCG-GGCG-----GCUAG----GCCG-CCGG- -5'
24844 3' -63.9 NC_005284.1 + 33998 0.67 0.271292
Target:  5'- gGGGUGCGgCgaggGCCGAUUCugcgcguucgaGGCGGUCg -3'
miRNA:   3'- gCCUACGCgGg---CGGCUAGG-----------CCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.