Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24865 | 3' | -65.5 | NC_005284.1 | + | 5188 | 0.7 | 0.138567 |
Target: 5'- -aCGCCaCUUGACGCCGaagaCCGCugaucaGCCCGa -3' miRNA: 3'- acGCGG-GAGCUGCGGCg---GGCG------UGGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 5399 | 0.69 | 0.142215 |
Target: 5'- cUGCuuGCCCgugCGGCGCgccaGCUCGCGCUCGg -3' miRNA: 3'- -ACG--CGGGa--GCUGCGg---CGGGCGUGGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 9903 | 0.69 | 0.142215 |
Target: 5'- aGCGCgCCgaaGCGUCGCUCGCGCUCGc -3' miRNA: 3'- aCGCG-GGagcUGCGGCGGGCGUGGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 44037 | 0.69 | 0.142215 |
Target: 5'- -aCGCCCUCGGCggccccccuuGCCGCa-GCAUCCAu -3' miRNA: 3'- acGCGGGAGCUG----------CGGCGggCGUGGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 14632 | 0.69 | 0.145952 |
Target: 5'- cGCGCuaCCUCGACGCCgugaauuuuccgGCCgGCAaUCCGa -3' miRNA: 3'- aCGCG--GGAGCUGCGG------------CGGgCGU-GGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 8744 | 0.69 | 0.153694 |
Target: 5'- cGCuuGCCgUCGAgGCCuGCUCGaCGCCCGg -3' miRNA: 3'- aCG--CGGgAGCUgCGG-CGGGC-GUGGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 15307 | 0.69 | 0.15409 |
Target: 5'- cGCGCCCgcuacaggagaaagaCGAUgGCacaGCaCCGCACCCAc -3' miRNA: 3'- aCGCGGGa--------------GCUG-CGg--CG-GGCGUGGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 46401 | 0.69 | 0.160565 |
Target: 5'- uUGCGCCCUgCGAcugaaaCGCCGCcgccgcgaucaucgCCGCAUgCAg -3' miRNA: 3'- -ACGCGGGA-GCU------GCGGCG--------------GGCGUGgGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 20764 | 0.69 | 0.160565 |
Target: 5'- uUGCGCuCCUCGAcCGCCucgaacgcGCagaaucggcccucgCCGCACCCc -3' miRNA: 3'- -ACGCG-GGAGCU-GCGG--------CG--------------GGCGUGGGu -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 26276 | 0.69 | 0.161806 |
Target: 5'- gGCGCUCcaaauCGCCGCCgCGCACaCCGa -3' miRNA: 3'- aCGCGGGagcu-GCGGCGG-GCGUG-GGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 7715 | 0.69 | 0.166006 |
Target: 5'- gUGCGCCgaagCUCGugcCGCCGCCgGCGgcguaacucCCCGa -3' miRNA: 3'- -ACGCGG----GAGCu--GCGGCGGgCGU---------GGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 23870 | 0.69 | 0.166006 |
Target: 5'- aGCGgCCaCGGCGcCCGCCCGaugcauCCCGa -3' miRNA: 3'- aCGCgGGaGCUGC-GGCGGGCgu----GGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 38616 | 0.69 | 0.166006 |
Target: 5'- aGCGCCaUCGACG-CGCCgaGC-CCCAu -3' miRNA: 3'- aCGCGGgAGCUGCgGCGGg-CGuGGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 27794 | 0.69 | 0.166006 |
Target: 5'- cGCGCCCUUuucggacgaGugGCgUGCCCGCgaagaGCUCAa -3' miRNA: 3'- aCGCGGGAG---------CugCG-GCGGGCG-----UGGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 21905 | 0.69 | 0.166006 |
Target: 5'- cGCGUuuUCGGCGUCGCCgGCGacgaUCAg -3' miRNA: 3'- aCGCGggAGCUGCGGCGGgCGUg---GGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 34238 | 0.69 | 0.167713 |
Target: 5'- cUGCGCCgUCGAUGUccugcggcguaacugCGCgCGCAgCCAg -3' miRNA: 3'- -ACGCGGgAGCUGCG---------------GCGgGCGUgGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 33475 | 0.68 | 0.174699 |
Target: 5'- cGCGCCgUCGGC-CgGCgCUGCugCCGa -3' miRNA: 3'- aCGCGGgAGCUGcGgCG-GGCGugGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 467 | 0.68 | 0.179196 |
Target: 5'- aGCGCCUggUCGGCGCaaaGCCgaaaaCACCCGa -3' miRNA: 3'- aCGCGGG--AGCUGCGg--CGGgc---GUGGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 5694 | 0.68 | 0.183795 |
Target: 5'- cGCGCUgCUCGAUGCCGaguugcuuaCCGCGgUCAg -3' miRNA: 3'- aCGCGG-GAGCUGCGGCg--------GGCGUgGGU- -5' |
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24865 | 3' | -65.5 | NC_005284.1 | + | 30929 | 0.68 | 0.193307 |
Target: 5'- gGCGCCgUgGcgcuuuCGCCGCCgGCgaucACCCAa -3' miRNA: 3'- aCGCGGgAgCu-----GCGGCGGgCG----UGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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