miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24865 3' -65.5 NC_005284.1 + 53527 0.71 0.10941
Target:  5'- gGC-CCCUCGAUGUucgCGCCCGCAgUCGu -3'
miRNA:   3'- aCGcGGGAGCUGCG---GCGGGCGUgGGU- -5'
24865 3' -65.5 NC_005284.1 + 49986 0.66 0.247528
Target:  5'- gUGCGCCUUCGGCuacuGCCGCUgCGUugUUc -3'
miRNA:   3'- -ACGCGGGAGCUG----CGGCGG-GCGugGGu -5'
24865 3' -65.5 NC_005284.1 + 49065 0.7 0.128131
Target:  5'- gGCGCCUUCuuguucauCGCCGCCggaGCugCCAc -3'
miRNA:   3'- aCGCGGGAGcu------GCGGCGGg--CGugGGU- -5'
24865 3' -65.5 NC_005284.1 + 48852 0.67 0.213629
Target:  5'- gGCGUCCgCaACuGCCGCCUGCAUCUc -3'
miRNA:   3'- aCGCGGGaGcUG-CGGCGGGCGUGGGu -5'
24865 3' -65.5 NC_005284.1 + 47130 0.67 0.208383
Target:  5'- --aGCCCauugacCGACGCCGCCCacguguacugacGCACCa- -3'
miRNA:   3'- acgCGGGa-----GCUGCGGCGGG------------CGUGGgu -5'
24865 3' -65.5 NC_005284.1 + 46401 0.69 0.160565
Target:  5'- uUGCGCCCUgCGAcugaaaCGCCGCcgccgcgaucaucgCCGCAUgCAg -3'
miRNA:   3'- -ACGCGGGA-GCU------GCGGCG--------------GGCGUGgGU- -5'
24865 3' -65.5 NC_005284.1 + 45798 0.66 0.246928
Target:  5'- gGCGUCggcaugCUCGGCGaagguguCCGCaCCGCACUCGa -3'
miRNA:   3'- aCGCGG------GAGCUGC-------GGCG-GGCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 45546 0.67 0.208383
Target:  5'- cGCGCUCUaugccgccgcgUGGCGCguCGCCCGCGCaCUc -3'
miRNA:   3'- aCGCGGGA-----------GCUGCG--GCGGGCGUG-GGu -5'
24865 3' -65.5 NC_005284.1 + 45220 0.71 0.10104
Target:  5'- cUGCGCUUuggCGAgCGCUGCCUGCGCCg- -3'
miRNA:   3'- -ACGCGGGa--GCU-GCGGCGGGCGUGGgu -5'
24865 3' -65.5 NC_005284.1 + 45031 0.75 0.055836
Target:  5'- uUGCGCCgUCGccuCGaCCGCCCGCGCUUc -3'
miRNA:   3'- -ACGCGGgAGCu--GC-GGCGGGCGUGGGu -5'
24865 3' -65.5 NC_005284.1 + 44681 0.66 0.235758
Target:  5'- cGCGCUUUCGGuCGCCGUCUuCagACCCGc -3'
miRNA:   3'- aCGCGGGAGCU-GCGGCGGGcG--UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 44645 0.74 0.06939
Target:  5'- cGUGCCCguacgcgCGAgCGCCGUCUGCGCCg- -3'
miRNA:   3'- aCGCGGGa------GCU-GCGGCGGGCGUGGgu -5'
24865 3' -65.5 NC_005284.1 + 44446 0.71 0.103761
Target:  5'- cGCGUgaUCUCGACGCCGCuUCGCACg-- -3'
miRNA:   3'- aCGCG--GGAGCUGCGGCG-GGCGUGggu -5'
24865 3' -65.5 NC_005284.1 + 44149 0.67 0.198223
Target:  5'- cGCGCagcgCUUCGcCGCCGCUCGuCGCCg- -3'
miRNA:   3'- aCGCG----GGAGCuGCGGCGGGC-GUGGgu -5'
24865 3' -65.5 NC_005284.1 + 44087 0.66 0.241583
Target:  5'- cGCGCCUUucugcgaagCGAgGcCCGCCgugucgauCGCGCCCGc -3'
miRNA:   3'- aCGCGGGA---------GCUgC-GGCGG--------GCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 44037 0.69 0.142215
Target:  5'- -aCGCCCUCGGCggccccccuuGCCGCa-GCAUCCAu -3'
miRNA:   3'- acGCGGGAGCUG----------CGGCGggCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 43442 0.67 0.229488
Target:  5'- uUGCGaccgCCUCGACGCgcaguugCGCgauCCGCugCCGg -3'
miRNA:   3'- -ACGCg---GGAGCUGCG-------GCG---GGCGugGGU- -5'
24865 3' -65.5 NC_005284.1 + 41048 0.66 0.246928
Target:  5'- cGCGCCgacguuuCUCGcgggGCGCCGCgUGCcucCCCAg -3'
miRNA:   3'- aCGCGG-------GAGC----UGCGGCGgGCGu--GGGU- -5'
24865 3' -65.5 NC_005284.1 + 38616 0.69 0.166006
Target:  5'- aGCGCCaUCGACG-CGCCgaGC-CCCAu -3'
miRNA:   3'- aCGCGGgAGCUGCgGCGGg-CGuGGGU- -5'
24865 3' -65.5 NC_005284.1 + 38256 0.67 0.218988
Target:  5'- -uUGUCCUgG-UGCCGCCagCGCGCCCGg -3'
miRNA:   3'- acGCGGGAgCuGCGGCGG--GCGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.