miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24870 3' -53.5 NC_005284.1 + 20476 0.94 0.017419
Target:  5'- aCCAACAACAGAGCCGCGcUgAUGCGCu -3'
miRNA:   3'- -GGUUGUUGUCUCGGCGCcAgUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 18805 0.74 0.366204
Target:  5'- uCCGGCAACGucGGGCCGUGGUucCcgGCGa -3'
miRNA:   3'- -GGUUGUUGU--CUCGGCGCCA--GuaCGCg -5'
24870 3' -53.5 NC_005284.1 + 54455 0.73 0.411529
Target:  5'- gUCGACGACAGGGCCguuGCGaGUCAaaucguccUGgGCg -3'
miRNA:   3'- -GGUUGUUGUCUCGG---CGC-CAGU--------ACgCG- -5'
24870 3' -53.5 NC_005284.1 + 45876 0.73 0.434484
Target:  5'- aCAGCucggcugucgcgucgAGCGGuuGCCGUGGUCGcGCGCg -3'
miRNA:   3'- gGUUG---------------UUGUCu-CGGCGCCAGUaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 36241 0.71 0.501185
Target:  5'- aCGGCGGCGGAGUgGUuuucccGGUCAguUGCGUa -3'
miRNA:   3'- gGUUGUUGUCUCGgCG------CCAGU--ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 23715 0.71 0.510637
Target:  5'- uCCuguCGAUGGAGCCGCugcuugGGUCGguugaccUGCGCu -3'
miRNA:   3'- -GGuu-GUUGUCUCGGCG------CCAGU-------ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 33112 0.71 0.511692
Target:  5'- gUCGACGGCGGccaccgccgacGCgGCGGcaUCGUGCGCg -3'
miRNA:   3'- -GGUUGUUGUCu----------CGgCGCC--AGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 10632 0.71 0.53297
Target:  5'- gUCGGCGAC-GAGCgGCGGcgaagCGcUGCGCg -3'
miRNA:   3'- -GGUUGUUGuCUCGgCGCCa----GU-ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 250 0.71 0.543728
Target:  5'- -gGGCuGACAGAgGCCGCuGUCGcgGCGCa -3'
miRNA:   3'- ggUUG-UUGUCU-CGGCGcCAGUa-CGCG- -5'
24870 3' -53.5 NC_005284.1 + 37372 0.71 0.543728
Target:  5'- uUCGACGuu-GAcGCCGCGGUCGU-CGCc -3'
miRNA:   3'- -GGUUGUuguCU-CGGCGCCAGUAcGCG- -5'
24870 3' -53.5 NC_005284.1 + 9646 0.71 0.554557
Target:  5'- uUCAGCGcagGCcGAGCuCGCGGgCAUGCGa -3'
miRNA:   3'- -GGUUGU---UGuCUCG-GCGCCaGUACGCg -5'
24870 3' -53.5 NC_005284.1 + 47362 0.71 0.554557
Target:  5'- uCCAGCGAUcccGaaGCGcGUCAUGCGCg -3'
miRNA:   3'- -GGUUGUUGucuCggCGC-CAGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 54461 0.7 0.565448
Target:  5'- uCCGAC-GCGGuG-CGCGGcaaucgUCAUGCGCg -3'
miRNA:   3'- -GGUUGuUGUCuCgGCGCC------AGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 10006 0.7 0.565448
Target:  5'- gCCGA-GACGGA-CCGCGGcCuUGCGCa -3'
miRNA:   3'- -GGUUgUUGUCUcGGCGCCaGuACGCG- -5'
24870 3' -53.5 NC_005284.1 + 32966 0.7 0.565448
Target:  5'- gCUGACAACgcuuggAGGGCgGCGGUCAcuCGCu -3'
miRNA:   3'- -GGUUGUUG------UCUCGgCGCCAGUacGCG- -5'
24870 3' -53.5 NC_005284.1 + 9249 0.7 0.587386
Target:  5'- gCGGCGGCauAGAG-CGCGGagCAUGCGUu -3'
miRNA:   3'- gGUUGUUG--UCUCgGCGCCa-GUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 14344 0.7 0.598416
Target:  5'- uCCAACAGCucGAGCCG-GGUCGacUGaucgaGCu -3'
miRNA:   3'- -GGUUGUUGu-CUCGGCgCCAGU--ACg----CG- -5'
24870 3' -53.5 NC_005284.1 + 44694 0.7 0.609476
Target:  5'- gCCGuCuuCAGAcccGCCGCGGUCGcggucgccGCGCg -3'
miRNA:   3'- -GGUuGuuGUCU---CGGCGCCAGUa-------CGCG- -5'
24870 3' -53.5 NC_005284.1 + 21310 0.7 0.609476
Target:  5'- gUCGGCAGCAGcgccGGCCGaCGGcgCGUGUaaGCa -3'
miRNA:   3'- -GGUUGUUGUC----UCGGC-GCCa-GUACG--CG- -5'
24870 3' -53.5 NC_005284.1 + 15810 0.69 0.620555
Target:  5'- gCCAGCGcGCAGc-CCGCGGaUCAgcaucGCGCa -3'
miRNA:   3'- -GGUUGU-UGUCucGGCGCC-AGUa----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.