miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24870 3' -53.5 NC_005284.1 + 250 0.71 0.543728
Target:  5'- -gGGCuGACAGAgGCCGCuGUCGcgGCGCa -3'
miRNA:   3'- ggUUG-UUGUCU-CGGCGcCAGUa-CGCG- -5'
24870 3' -53.5 NC_005284.1 + 453 0.68 0.708694
Target:  5'- cCCGGCGagccgGCAGcGCC-UGGUCG-GCGCa -3'
miRNA:   3'- -GGUUGU-----UGUCuCGGcGCCAGUaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 1459 0.66 0.820653
Target:  5'- gCCAGCAGCAGcG-UGCGauuaaGUC-UGCGCg -3'
miRNA:   3'- -GGUUGUUGUCuCgGCGC-----CAGuACGCG- -5'
24870 3' -53.5 NC_005284.1 + 4440 0.67 0.771897
Target:  5'- cCCGGCAcacGCAGAaagcacgguucGCCGCGG-CAcGcCGCc -3'
miRNA:   3'- -GGUUGU---UGUCU-----------CGGCGCCaGUaC-GCG- -5'
24870 3' -53.5 NC_005284.1 + 4641 0.66 0.811262
Target:  5'- gCAGCGGCGuGAGCgGCagcaacucgcuGGUCGU-CGCg -3'
miRNA:   3'- gGUUGUUGU-CUCGgCG-----------CCAGUAcGCG- -5'
24870 3' -53.5 NC_005284.1 + 6754 0.69 0.642735
Target:  5'- uCCAACGugcgaAGGGUCGacgacaCGGUCAcGCGCg -3'
miRNA:   3'- -GGUUGUug---UCUCGGC------GCCAGUaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 9085 0.66 0.80168
Target:  5'- --cGCGGCGGGGCaguugCGCGGUCAggaucugaauaGCGUg -3'
miRNA:   3'- gguUGUUGUCUCG-----GCGCCAGUa----------CGCG- -5'
24870 3' -53.5 NC_005284.1 + 9249 0.7 0.587386
Target:  5'- gCGGCGGCauAGAG-CGCGGagCAUGCGUu -3'
miRNA:   3'- gGUUGUUG--UCUCgGCGCCa-GUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 9410 0.68 0.674803
Target:  5'- aCCAACAACGG-GCCgaugaugGCGGUgGUGagucgaaacgaaCGCg -3'
miRNA:   3'- -GGUUGUUGUCuCGG-------CGCCAgUAC------------GCG- -5'
24870 3' -53.5 NC_005284.1 + 9646 0.71 0.554557
Target:  5'- uUCAGCGcagGCcGAGCuCGCGGgCAUGCGa -3'
miRNA:   3'- -GGUUGU---UGuCUCG-GCGCCaGUACGCg -5'
24870 3' -53.5 NC_005284.1 + 10006 0.7 0.565448
Target:  5'- gCCGA-GACGGA-CCGCGGcCuUGCGCa -3'
miRNA:   3'- -GGUUgUUGUCUcGGCGCCaGuACGCG- -5'
24870 3' -53.5 NC_005284.1 + 10456 0.66 0.829843
Target:  5'- uCCAcagaGCGAUuucgAGuGCCGCGGgCAUG-GCa -3'
miRNA:   3'- -GGU----UGUUG----UCuCGGCGCCaGUACgCG- -5'
24870 3' -53.5 NC_005284.1 + 10632 0.71 0.53297
Target:  5'- gUCGGCGAC-GAGCgGCGGcgaagCGcUGCGCg -3'
miRNA:   3'- -GGUUGUUGuCUCGgCGCCa----GU-ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 11310 0.68 0.719487
Target:  5'- --cGCGACAGuAGCCGguCGGaUCuUGCGCc -3'
miRNA:   3'- gguUGUUGUC-UCGGC--GCC-AGuACGCG- -5'
24870 3' -53.5 NC_005284.1 + 11329 0.67 0.751291
Target:  5'- uCCGGCAGCGGA-UCGCGcaacUGCGCg -3'
miRNA:   3'- -GGUUGUUGUCUcGGCGCcaguACGCG- -5'
24870 3' -53.5 NC_005284.1 + 11796 0.69 0.631645
Target:  5'- aUCAACAcggccgagGCGGAGCa--GGUCGcGCGCg -3'
miRNA:   3'- -GGUUGU--------UGUCUCGgcgCCAGUaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 12417 0.69 0.653815
Target:  5'- gCAACGGCGGGaUCuCGGUCA-GCGCg -3'
miRNA:   3'- gGUUGUUGUCUcGGcGCCAGUaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 14344 0.7 0.598416
Target:  5'- uCCAACAGCucGAGCCG-GGUCGacUGaucgaGCu -3'
miRNA:   3'- -GGUUGUUGu-CUCGGCgCCAGU--ACg----CG- -5'
24870 3' -53.5 NC_005284.1 + 14894 0.66 0.80168
Target:  5'- gUCAGCGcaaACGcGAGCCGUGaGaCGUGgGCg -3'
miRNA:   3'- -GGUUGU---UGU-CUCGGCGC-CaGUACgCG- -5'
24870 3' -53.5 NC_005284.1 + 15762 0.67 0.771897
Target:  5'- gCCGACAGCu--GCaCGaCGGUgcUGCGCu -3'
miRNA:   3'- -GGUUGUUGucuCG-GC-GCCAguACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.