miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24870 3' -53.5 NC_005284.1 + 21830 0.67 0.781987
Target:  5'- cCCGGCGcuucCAGcGCCGcCGG-CGUGgGCg -3'
miRNA:   3'- -GGUUGUu---GUCuCGGC-GCCaGUACgCG- -5'
24870 3' -53.5 NC_005284.1 + 47697 0.69 0.653815
Target:  5'- aCGGCAAggaAGGGCaCGCGcGcucgCGUGCGCa -3'
miRNA:   3'- gGUUGUUg--UCUCG-GCGC-Ca---GUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 25514 0.69 0.664876
Target:  5'- aCCggUGgaauCGGAGCgGCcgucGUCGUGCGCg -3'
miRNA:   3'- -GGuuGUu---GUCUCGgCGc---CAGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 16738 0.68 0.686892
Target:  5'- uCCAgaauacGCAACuGA-CUGCGGUgcgCGUGCGCu -3'
miRNA:   3'- -GGU------UGUUGuCUcGGCGCCA---GUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 453 0.68 0.708694
Target:  5'- cCCGGCGagccgGCAGcGCC-UGGUCG-GCGCa -3'
miRNA:   3'- -GGUUGU-----UGUCuCGGcGCCAGUaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 24928 0.68 0.708694
Target:  5'- aCGACAugacGCAGAucccuCCGCGccgaUCAUGCGCu -3'
miRNA:   3'- gGUUGU----UGUCUc----GGCGCc---AGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 19201 0.67 0.740797
Target:  5'- aCGACAACGcGGCCGCuGUaCAaaccgugGCGCa -3'
miRNA:   3'- gGUUGUUGUcUCGGCGcCA-GUa------CGCG- -5'
24870 3' -53.5 NC_005284.1 + 11329 0.67 0.751291
Target:  5'- uCCGGCAGCGGA-UCGCGcaacUGCGCg -3'
miRNA:   3'- -GGUUGUUGUCUcGGCGCcaguACGCG- -5'
24870 3' -53.5 NC_005284.1 + 15762 0.67 0.771897
Target:  5'- gCCGACAGCu--GCaCGaCGGUgcUGCGCu -3'
miRNA:   3'- -GGUUGUUGucuCG-GC-GCCAguACGCG- -5'
24870 3' -53.5 NC_005284.1 + 12417 0.69 0.653815
Target:  5'- gCAACGGCGGGaUCuCGGUCA-GCGCg -3'
miRNA:   3'- gGUUGUUGUCUcGGcGCCAGUaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 21560 0.69 0.642735
Target:  5'- gCCGACgAGCAG-GCCGCGcGggCGUucgacGCGCa -3'
miRNA:   3'- -GGUUG-UUGUCuCGGCGC-Ca-GUA-----CGCG- -5'
24870 3' -53.5 NC_005284.1 + 11796 0.69 0.631645
Target:  5'- aUCAACAcggccgagGCGGAGCa--GGUCGcGCGCg -3'
miRNA:   3'- -GGUUGU--------UGUCUCGgcgCCAGUaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 10632 0.71 0.53297
Target:  5'- gUCGGCGAC-GAGCgGCGGcgaagCGcUGCGCg -3'
miRNA:   3'- -GGUUGUUGuCUCGgCGCCa----GU-ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 37372 0.71 0.543728
Target:  5'- uUCGACGuu-GAcGCCGCGGUCGU-CGCc -3'
miRNA:   3'- -GGUUGUuguCU-CGGCGCCAGUAcGCG- -5'
24870 3' -53.5 NC_005284.1 + 9646 0.71 0.554557
Target:  5'- uUCAGCGcagGCcGAGCuCGCGGgCAUGCGa -3'
miRNA:   3'- -GGUUGU---UGuCUCG-GCGCCaGUACGCg -5'
24870 3' -53.5 NC_005284.1 + 47362 0.71 0.554557
Target:  5'- uCCAGCGAUcccGaaGCGcGUCAUGCGCg -3'
miRNA:   3'- -GGUUGUUGucuCggCGC-CAGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 32966 0.7 0.565448
Target:  5'- gCUGACAACgcuuggAGGGCgGCGGUCAcuCGCu -3'
miRNA:   3'- -GGUUGUUG------UCUCGgCGCCAGUacGCG- -5'
24870 3' -53.5 NC_005284.1 + 10006 0.7 0.565448
Target:  5'- gCCGA-GACGGA-CCGCGGcCuUGCGCa -3'
miRNA:   3'- -GGUUgUUGUCUcGGCGCCaGuACGCG- -5'
24870 3' -53.5 NC_005284.1 + 54461 0.7 0.565448
Target:  5'- uCCGAC-GCGGuG-CGCGGcaaucgUCAUGCGCg -3'
miRNA:   3'- -GGUUGuUGUCuCgGCGCC------AGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 14344 0.7 0.598416
Target:  5'- uCCAACAGCucGAGCCG-GGUCGacUGaucgaGCu -3'
miRNA:   3'- -GGUUGUUGu-CUCGGCgCCAGU--ACg----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.