miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24873 5' -51.1 NC_005284.1 + 54621 0.66 0.929623
Target:  5'- -cAGUCCGGCGgcUCGAUguucgugaccaaGCCGAAgucuGGCUc -3'
miRNA:   3'- ccUUAGGCUGC--AGCUA------------CGGCUU----UCGA- -5'
24873 5' -51.1 NC_005284.1 + 42884 0.66 0.929623
Target:  5'- cGGGccUCuCGAUGgaCGAUGCCGAGAgGCg -3'
miRNA:   3'- -CCUu-AG-GCUGCa-GCUACGGCUUU-CGa -5'
24873 5' -51.1 NC_005284.1 + 35545 0.66 0.929623
Target:  5'- -cGGUCgCGAgGUCGA-GCCGaAGAGCc -3'
miRNA:   3'- ccUUAG-GCUgCAGCUaCGGC-UUUCGa -5'
24873 5' -51.1 NC_005284.1 + 23996 0.66 0.923778
Target:  5'- gGGAcgAUCCGGacuauCGUCGGUG-CGAucGCa -3'
miRNA:   3'- -CCU--UAGGCU-----GCAGCUACgGCUuuCGa -5'
24873 5' -51.1 NC_005284.1 + 46562 0.66 0.911227
Target:  5'- gGGcGAUCCGAUGU---UGCCGAGcauGGCg -3'
miRNA:   3'- -CC-UUAGGCUGCAgcuACGGCUU---UCGa -5'
24873 5' -51.1 NC_005284.1 + 16663 0.66 0.904523
Target:  5'- cGGGuuuUCCGGcCGUCGAgcgugagGCCGGcgucGGCg -3'
miRNA:   3'- -CCUu--AGGCU-GCAGCUa------CGGCUu---UCGa -5'
24873 5' -51.1 NC_005284.1 + 20026 0.66 0.904523
Target:  5'- uGGAuAUCCgGACaUCGc-GCCGGAAGCa -3'
miRNA:   3'- -CCU-UAGG-CUGcAGCuaCGGCUUUCGa -5'
24873 5' -51.1 NC_005284.1 + 24550 0.67 0.897538
Target:  5'- cGGAcaauAUCCGGCcagacCGAcGCCGAcGGCUa -3'
miRNA:   3'- -CCU----UAGGCUGca---GCUaCGGCUuUCGA- -5'
24873 5' -51.1 NC_005284.1 + 7478 0.67 0.890275
Target:  5'- aGGAAUCCGAgcUCGGcuUGCcCGAuccGGGCg -3'
miRNA:   3'- -CCUUAGGCUgcAGCU--ACG-GCU---UUCGa -5'
24873 5' -51.1 NC_005284.1 + 10502 0.67 0.882738
Target:  5'- --cGUCgGugGUCucgGAUGCCGAucAGGCa -3'
miRNA:   3'- ccuUAGgCugCAG---CUACGGCU--UUCGa -5'
24873 5' -51.1 NC_005284.1 + 40128 0.67 0.882738
Target:  5'- cGggUCCGcCGUCGGauugccgGCCGGAaaauucacGGCg -3'
miRNA:   3'- cCuuAGGCuGCAGCUa------CGGCUU--------UCGa -5'
24873 5' -51.1 NC_005284.1 + 14663 0.68 0.861907
Target:  5'- cGGcAAUCCGACGgCGGacccgaacgaagaaaUGCCGAcgcAGCa -3'
miRNA:   3'- -CC-UUAGGCUGCaGCU---------------ACGGCUu--UCGa -5'
24873 5' -51.1 NC_005284.1 + 36290 0.68 0.858549
Target:  5'- cGGAAU-CGACGUCac-GCCGAgcGCg -3'
miRNA:   3'- -CCUUAgGCUGCAGcuaCGGCUuuCGa -5'
24873 5' -51.1 NC_005284.1 + 1396 0.68 0.858549
Target:  5'- cGGAGUUCGACGUCGcUGgcauCCGcgcacAGCUa -3'
miRNA:   3'- -CCUUAGGCUGCAGCuAC----GGCuu---UCGA- -5'
24873 5' -51.1 NC_005284.1 + 9174 0.68 0.849114
Target:  5'- aGAGUUCGGCGcagcucaaaUCGAUgGCCGAagagggaAAGCUg -3'
miRNA:   3'- cCUUAGGCUGC---------AGCUA-CGGCU-------UUCGA- -5'
24873 5' -51.1 NC_005284.1 + 19519 0.69 0.813437
Target:  5'- uGGAcgCCGACaccaccCGAUGgCGAAGGUUg -3'
miRNA:   3'- -CCUuaGGCUGca----GCUACgGCUUUCGA- -5'
24873 5' -51.1 NC_005284.1 + 22871 0.69 0.773728
Target:  5'- gGGAAg--GGCGUCGAgcGCCGcGAGCUg -3'
miRNA:   3'- -CCUUaggCUGCAGCUa-CGGCuUUCGA- -5'
24873 5' -51.1 NC_005284.1 + 27955 0.69 0.772701
Target:  5'- gGGAAgaguggcUCaCGACGUCGAaUGCUGAAGccGCUc -3'
miRNA:   3'- -CCUU-------AG-GCUGCAGCU-ACGGCUUU--CGA- -5'
24873 5' -51.1 NC_005284.1 + 10860 0.7 0.763391
Target:  5'- aGAAUCCGACGucaUCGGUaugacggcccGCCaGAAGGCc -3'
miRNA:   3'- cCUUAGGCUGC---AGCUA----------CGG-CUUUCGa -5'
24873 5' -51.1 NC_005284.1 + 19956 0.7 0.763391
Target:  5'- ----aUCGACGcCGGUGCCGGGcuGGCUu -3'
miRNA:   3'- ccuuaGGCUGCaGCUACGGCUU--UCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.