miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24874 5' -50.9 NC_005284.1 + 36844 0.66 0.935678
Target:  5'- --aGCGAUCGccGgcGGCGAUUGucGGc -3'
miRNA:   3'- ccgCGCUAGCu-CuuCCGCUAACuuCU- -5'
24874 5' -50.9 NC_005284.1 + 45151 0.66 0.924278
Target:  5'- aGGCGUGGUCGAcgcacggcGAcgucGGGCagGAgaucgUGAAGAc -3'
miRNA:   3'- -CCGCGCUAGCU--------CU----UCCG--CUa----ACUUCU- -5'
24874 5' -50.9 NC_005284.1 + 17962 0.66 0.905005
Target:  5'- aGUGCGAUCGccaAGGGCGAggccGAAGc -3'
miRNA:   3'- cCGCGCUAGCuc-UUCCGCUaa--CUUCu -5'
24874 5' -50.9 NC_005284.1 + 9523 0.67 0.898008
Target:  5'- cGCGCGGagauaUCGAGAAGcaccuGCGcaugcUUGAAGAu -3'
miRNA:   3'- cCGCGCU-----AGCUCUUC-----CGCu----AACUUCU- -5'
24874 5' -50.9 NC_005284.1 + 50255 0.67 0.897293
Target:  5'- cGGCGaCGcugaagcGUC-AGAAGGCGAUcgUGAAGc -3'
miRNA:   3'- -CCGC-GC-------UAGcUCUUCCGCUA--ACUUCu -5'
24874 5' -50.9 NC_005284.1 + 12195 0.67 0.883177
Target:  5'- -uCGCGA-CGGGcGGGGCGGUgUGggGAc -3'
miRNA:   3'- ccGCGCUaGCUC-UUCCGCUA-ACuuCU- -5'
24874 5' -50.9 NC_005284.1 + 34020 0.67 0.875354
Target:  5'- uGCGCGuUCGA---GGCGGUcGAGGAg -3'
miRNA:   3'- cCGCGCuAGCUcuuCCGCUAaCUUCU- -5'
24874 5' -50.9 NC_005284.1 + 10683 0.67 0.867266
Target:  5'- gGGCGCGAUCGAcacGGCGGg------ -3'
miRNA:   3'- -CCGCGCUAGCUcuuCCGCUaacuucu -5'
24874 5' -50.9 NC_005284.1 + 6814 0.68 0.858922
Target:  5'- cGGCGaGGcCGAGggGGCGAUUc---- -3'
miRNA:   3'- -CCGCgCUaGCUCuuCCGCUAAcuucu -5'
24874 5' -50.9 NC_005284.1 + 19391 0.68 0.850329
Target:  5'- cGcCGUGAUCGAcGAGGGCGGUgc-AGGc -3'
miRNA:   3'- cC-GCGCUAGCU-CUUCCGCUAacuUCU- -5'
24874 5' -50.9 NC_005284.1 + 40381 0.68 0.841496
Target:  5'- cGGUGCag-CGAGcAAGGCugcgguaugGAUUGGAGAa -3'
miRNA:   3'- -CCGCGcuaGCUC-UUCCG---------CUAACUUCU- -5'
24874 5' -50.9 NC_005284.1 + 47784 0.69 0.81365
Target:  5'- aGGCgGCGcUCGcGGAGGCGAcgGgcGAg -3'
miRNA:   3'- -CCG-CGCuAGCuCUUCCGCUaaCuuCU- -5'
24874 5' -50.9 NC_005284.1 + 45964 0.69 0.794069
Target:  5'- cGCGUGA-CGAuccGAAGGCGAUUGcucAGGu -3'
miRNA:   3'- cCGCGCUaGCU---CUUCCGCUAACu--UCU- -5'
24874 5' -50.9 NC_005284.1 + 1844 0.69 0.794069
Target:  5'- -uCGCGAcauucUCGAGGAGGCGAagGAugcGAa -3'
miRNA:   3'- ccGCGCU-----AGCUCUUCCGCUaaCUu--CU- -5'
24874 5' -50.9 NC_005284.1 + 40911 0.69 0.78299
Target:  5'- cGUGCGAaucuuguUCGAGAAGGCGuguucaauUUGAAc- -3'
miRNA:   3'- cCGCGCU-------AGCUCUUCCGCu-------AACUUcu -5'
24874 5' -50.9 NC_005284.1 + 49492 0.7 0.763396
Target:  5'- -cCGCcAUCGAGAAGGCGccgacGAGGAa -3'
miRNA:   3'- ccGCGcUAGCUCUUCCGCuaa--CUUCU- -5'
24874 5' -50.9 NC_005284.1 + 49143 0.7 0.735772
Target:  5'- aGGCGCGcGUCGucaAGGcggacgggcccggcgAGGCGAUgGAGGAa -3'
miRNA:   3'- -CCGCGC-UAGC---UCU---------------UCCGCUAaCUUCU- -5'
24874 5' -50.9 NC_005284.1 + 9103 0.71 0.698566
Target:  5'- cGCGCGGUCGuGAAGGCGu------- -3'
miRNA:   3'- cCGCGCUAGCuCUUCCGCuaacuucu -5'
24874 5' -50.9 NC_005284.1 + 6851 0.73 0.5975
Target:  5'- cGCGCGAUCGAucgugugcucgGAGGGCGGcggUGAGc- -3'
miRNA:   3'- cCGCGCUAGCU-----------CUUCCGCUa--ACUUcu -5'
24874 5' -50.9 NC_005284.1 + 17716 0.73 0.575116
Target:  5'- cGGCGCG-UCGAu--GGCGGUcGAGGAc -3'
miRNA:   3'- -CCGCGCuAGCUcuuCCGCUAaCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.