miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24884 3' -60.2 NC_005284.1 + 33513 0.66 0.491846
Target:  5'- aGCGGGauaguUCGUCUGCcgcuucgcgaaGAUCaUCUUCGAGCa -3'
miRNA:   3'- -CGUCC-----GGCAGGCG-----------CUGG-AGGAGCUCG- -5'
24884 3' -60.2 NC_005284.1 + 43921 0.66 0.491846
Target:  5'- gGCGGGCCGUCauacCGAugacgucggauuCUUCCcUGAGCu -3'
miRNA:   3'- -CGUCCGGCAGgc--GCU------------GGAGGaGCUCG- -5'
24884 3' -60.2 NC_005284.1 + 6995 0.66 0.482023
Target:  5'- -aAGcGCuCGcCCGUcGCCUCCgCGAGCg -3'
miRNA:   3'- cgUC-CG-GCaGGCGcUGGAGGaGCUCG- -5'
24884 3' -60.2 NC_005284.1 + 6881 0.66 0.482023
Target:  5'- --uGGCCGUCgGCGGgaaCUgCUCGcGCa -3'
miRNA:   3'- cguCCGGCAGgCGCUg--GAgGAGCuCG- -5'
24884 3' -60.2 NC_005284.1 + 8734 0.66 0.472296
Target:  5'- -gAGGCCGgagcgcuugCCGUcgaGGCCUgCUCGAcGCc -3'
miRNA:   3'- cgUCCGGCa--------GGCG---CUGGAgGAGCU-CG- -5'
24884 3' -60.2 NC_005284.1 + 3714 0.66 0.472296
Target:  5'- --uGGCCGUCgucgaGCucGACaC-CCUCGAGCg -3'
miRNA:   3'- cguCCGGCAGg----CG--CUG-GaGGAGCUCG- -5'
24884 3' -60.2 NC_005284.1 + 38919 0.66 0.472296
Target:  5'- gGCGGGuuGguuagGCGGCUUCCcguucggCGAGCa -3'
miRNA:   3'- -CGUCCggCagg--CGCUGGAGGa------GCUCG- -5'
24884 3' -60.2 NC_005284.1 + 9651 0.66 0.472296
Target:  5'- cGCAGGCCGagcUCGCGGgCaug-CGAGCg -3'
miRNA:   3'- -CGUCCGGCa--GGCGCUgGaggaGCUCG- -5'
24884 3' -60.2 NC_005284.1 + 24416 0.66 0.472296
Target:  5'- cGCGGGCCGagCGC-AUCgcCCUCGcGCu -3'
miRNA:   3'- -CGUCCGGCagGCGcUGGa-GGAGCuCG- -5'
24884 3' -60.2 NC_005284.1 + 50672 0.66 0.468433
Target:  5'- uCAGGCCGcgauuggcgauaaCCGCGGCCauggaCUUCGAGa -3'
miRNA:   3'- cGUCCGGCa------------GGCGCUGGa----GGAGCUCg -5'
24884 3' -60.2 NC_005284.1 + 36854 0.66 0.462669
Target:  5'- gGCGGcGaUUGUCgGCG-CCUUgUCGAGCg -3'
miRNA:   3'- -CGUC-C-GGCAGgCGCuGGAGgAGCUCG- -5'
24884 3' -60.2 NC_005284.1 + 29581 0.66 0.462669
Target:  5'- -gGGGCCcauagUCGCaACCUUUUCGGGCg -3'
miRNA:   3'- cgUCCGGca---GGCGcUGGAGGAGCUCG- -5'
24884 3' -60.2 NC_005284.1 + 37127 0.66 0.453146
Target:  5'- cGCAGGUagaCGcCCGUGAUCUCaUCGAcuccGCg -3'
miRNA:   3'- -CGUCCG---GCaGGCGCUGGAGgAGCU----CG- -5'
24884 3' -60.2 NC_005284.1 + 46354 0.67 0.443731
Target:  5'- cGCGGGCuCG-CCG-GACCaUCUCG-GCa -3'
miRNA:   3'- -CGUCCG-GCaGGCgCUGGaGGAGCuCG- -5'
24884 3' -60.2 NC_005284.1 + 45817 0.67 0.425236
Target:  5'- -aAGG-UGUCCGC-ACCgcaCUCGAGCa -3'
miRNA:   3'- cgUCCgGCAGGCGcUGGag-GAGCUCG- -5'
24884 3' -60.2 NC_005284.1 + 3049 0.67 0.416163
Target:  5'- cGCAGGCgCG-CCGCGAUCUUUcCGuacacGCg -3'
miRNA:   3'- -CGUCCG-GCaGGCGCUGGAGGaGCu----CG- -5'
24884 3' -60.2 NC_005284.1 + 6059 0.67 0.407209
Target:  5'- -gGGGgCGUCCGCGAgCgucaCCgaacuucCGAGCg -3'
miRNA:   3'- cgUCCgGCAGGCGCUgGa---GGa------GCUCG- -5'
24884 3' -60.2 NC_005284.1 + 45642 0.68 0.389669
Target:  5'- cCAuGCCGcgcgcgauagcaUCCGCGACacccggcaaCUCUUCGAGCa -3'
miRNA:   3'- cGUcCGGC------------AGGCGCUG---------GAGGAGCUCG- -5'
24884 3' -60.2 NC_005284.1 + 14966 0.68 0.381086
Target:  5'- cGCGcGCCGUUCgGCGGCUUCCU-GuGCg -3'
miRNA:   3'- -CGUcCGGCAGG-CGCUGGAGGAgCuCG- -5'
24884 3' -60.2 NC_005284.1 + 25671 0.68 0.37263
Target:  5'- cGCA-GCCGUUCGCGcgagccaaGCCUCUgCGuGCa -3'
miRNA:   3'- -CGUcCGGCAGGCGC--------UGGAGGaGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.