miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24905 5' -52.4 NC_005284.1 + 4813 1.13 0.001018
Target:  5'- aGCCGAAGGCGCACAGAAACCGACUUCg -3'
miRNA:   3'- -CGGCUUCCGCGUGUCUUUGGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 33770 0.77 0.295102
Target:  5'- uGUCGAAGuGCGC-CGGc-GCCGACUUCg -3'
miRNA:   3'- -CGGCUUC-CGCGuGUCuuUGGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 48961 0.73 0.454604
Target:  5'- cGCCGccGGGCGUguccACGGc-GCCGACUUCu -3'
miRNA:   3'- -CGGCu-UCCGCG----UGUCuuUGGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 34034 0.73 0.485451
Target:  5'- gGUCGAGGaGCGCAaGGAucgucGCUGGCUUCg -3'
miRNA:   3'- -CGGCUUC-CGCGUgUCUu----UGGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 51768 0.72 0.506559
Target:  5'- -gUGGAGGCGUuaGCGGuAGGCCGGCUUa -3'
miRNA:   3'- cgGCUUCCGCG--UGUC-UUUGGCUGAAg -5'
24905 5' -52.4 NC_005284.1 + 15491 0.72 0.506559
Target:  5'- cGCCGAGcgcGGCGuCGCGuuAcCCGACUUCg -3'
miRNA:   3'- -CGGCUU---CCGC-GUGUcuUuGGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 27677 0.72 0.538922
Target:  5'- gGCCGGcguGGCGCGCGGGucGCCG-CUg- -3'
miRNA:   3'- -CGGCUu--CCGCGUGUCUu-UGGCuGAag -5'
24905 5' -52.4 NC_005284.1 + 35214 0.71 0.583086
Target:  5'- aGCCGAccGGGCGCacauccGCAGAAcacGCCGcCUaUCg -3'
miRNA:   3'- -CGGCU--UCCGCG------UGUCUU---UGGCuGA-AG- -5'
24905 5' -52.4 NC_005284.1 + 54613 0.71 0.594255
Target:  5'- uUCGAAGGCGCGgGGuggcACCGACc-- -3'
miRNA:   3'- cGGCUUCCGCGUgUCuu--UGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 19002 0.71 0.598733
Target:  5'- gGUCGAucGGcGCGCGCAGcuccgugccaagcGCCGACUUCc -3'
miRNA:   3'- -CGGCU--UC-CGCGUGUCuu-----------UGGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 8647 0.7 0.616684
Target:  5'- uGCgCGAcggcGGGCGCACAGcgGAugCGGCg-- -3'
miRNA:   3'- -CG-GCU----UCCGCGUGUC--UUugGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 18215 0.7 0.627924
Target:  5'- -aCGAcGGCGCACAGAuucagcaacGGCCGAUc-- -3'
miRNA:   3'- cgGCUuCCGCGUGUCU---------UUGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 16989 0.7 0.638044
Target:  5'- cGCCGAAcGCGCACAcggcgacGAucGCCGACg-- -3'
miRNA:   3'- -CGGCUUcCGCGUGU-------CUu-UGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 23273 0.7 0.639169
Target:  5'- cGUUuAAGGCGCGCGGu-GCCGAUaUCg -3'
miRNA:   3'- -CGGcUUCCGCGUGUCuuUGGCUGaAG- -5'
24905 5' -52.4 NC_005284.1 + 25579 0.7 0.650406
Target:  5'- cGCCGuccGCGCgGCGGuuGCCGACUg- -3'
miRNA:   3'- -CGGCuucCGCG-UGUCuuUGGCUGAag -5'
24905 5' -52.4 NC_005284.1 + 24805 0.7 0.650406
Target:  5'- gGCCGAAGaCGCACGGGcgUCG-UUUCg -3'
miRNA:   3'- -CGGCUUCcGCGUGUCUuuGGCuGAAG- -5'
24905 5' -52.4 NC_005284.1 + 6536 0.7 0.661626
Target:  5'- -aCGAAGGCGCuCAGgcGCgCGACa-- -3'
miRNA:   3'- cgGCUUCCGCGuGUCuuUG-GCUGaag -5'
24905 5' -52.4 NC_005284.1 + 38006 0.7 0.661626
Target:  5'- uCCGA--GCGCACAuagcgcGAAGCCGACcUCa -3'
miRNA:   3'- cGGCUucCGCGUGU------CUUUGGCUGaAG- -5'
24905 5' -52.4 NC_005284.1 + 21357 0.69 0.672818
Target:  5'- uGCCGcaguAGGCGCGCGGc--CCGAUg-- -3'
miRNA:   3'- -CGGCu---UCCGCGUGUCuuuGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 47851 0.69 0.695069
Target:  5'- cGCgGAAaGCGCACAGGAggccACCGAaugagUUUCg -3'
miRNA:   3'- -CGgCUUcCGCGUGUCUU----UGGCU-----GAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.