Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24905 | 5' | -52.4 | NC_005284.1 | + | 1260 | 0.67 | 0.780562 |
Target: 5'- aCUGcGGGCGCGaacaucgAGggGCCGuGCUUCg -3' miRNA: 3'- cGGCuUCCGCGUg------UCuuUGGC-UGAAG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 6536 | 0.7 | 0.661626 |
Target: 5'- -aCGAAGGCGCuCAGgcGCgCGACa-- -3' miRNA: 3'- cgGCUUCCGCGuGUCuuUG-GCUGaag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 11560 | 0.69 | 0.695069 |
Target: 5'- gGCUGAAGGaGCGCAGugcgcAGAUCGACg-- -3' miRNA: 3'- -CGGCUUCCgCGUGUC-----UUUGGCUGaag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 47851 | 0.69 | 0.695069 |
Target: 5'- cGCgGAAaGCGCACAGGAggccACCGAaugagUUUCg -3' miRNA: 3'- -CGgCUUcCGCGUGUCUU----UGGCU-----GAAG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 9748 | 0.69 | 0.706105 |
Target: 5'- uGCCGAAGcGCGgGCGGucGAGgCGACggCg -3' miRNA: 3'- -CGGCUUC-CGCgUGUC--UUUgGCUGaaG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 1813 | 0.69 | 0.717066 |
Target: 5'- uGCuCGAAacGGaugGCGCGGAGAUCGACUaUCg -3' miRNA: 3'- -CG-GCUU--CCg--CGUGUCUUUGGCUGA-AG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 40746 | 0.69 | 0.717066 |
Target: 5'- cGCUGAucGGGUGCAUGcGAuuuuGGCCGACUg- -3' miRNA: 3'- -CGGCU--UCCGCGUGU-CU----UUGGCUGAag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 34848 | 0.68 | 0.749374 |
Target: 5'- cGUCGcacAGGCGCACGauuGGGAUCGGCUc- -3' miRNA: 3'- -CGGCu--UCCGCGUGU---CUUUGGCUGAag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 49051 | 0.68 | 0.749374 |
Target: 5'- uGCCGAcuggcacaAGaGCGCGCAGGGugucACUGACcgCg -3' miRNA: 3'- -CGGCU--------UC-CGCGUGUCUU----UGGCUGaaG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 25579 | 0.7 | 0.650406 |
Target: 5'- cGCCGuccGCGCgGCGGuuGCCGACUg- -3' miRNA: 3'- -CGGCuucCGCG-UGUCuuUGGCUGAag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 23273 | 0.7 | 0.639169 |
Target: 5'- cGUUuAAGGCGCGCGGu-GCCGAUaUCg -3' miRNA: 3'- -CGGcUUCCGCGUGUCuuUGGCUGaAG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 16989 | 0.7 | 0.638044 |
Target: 5'- cGCCGAAcGCGCACAcggcgacGAucGCCGACg-- -3' miRNA: 3'- -CGGCUUcCGCGUGU-------CUu-UGGCUGaag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 33770 | 0.77 | 0.295102 |
Target: 5'- uGUCGAAGuGCGC-CGGc-GCCGACUUCg -3' miRNA: 3'- -CGGCUUC-CGCGuGUCuuUGGCUGAAG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 34034 | 0.73 | 0.485451 |
Target: 5'- gGUCGAGGaGCGCAaGGAucgucGCUGGCUUCg -3' miRNA: 3'- -CGGCUUC-CGCGUgUCUu----UGGCUGAAG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 51768 | 0.72 | 0.506559 |
Target: 5'- -gUGGAGGCGUuaGCGGuAGGCCGGCUUa -3' miRNA: 3'- cgGCUUCCGCG--UGUC-UUUGGCUGAAg -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 15491 | 0.72 | 0.506559 |
Target: 5'- cGCCGAGcgcGGCGuCGCGuuAcCCGACUUCg -3' miRNA: 3'- -CGGCUU---CCGC-GUGUcuUuGGCUGAAG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 27677 | 0.72 | 0.538922 |
Target: 5'- gGCCGGcguGGCGCGCGGGucGCCG-CUg- -3' miRNA: 3'- -CGGCUu--CCGCGUGUCUu-UGGCuGAag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 54613 | 0.71 | 0.594255 |
Target: 5'- uUCGAAGGCGCGgGGuggcACCGACc-- -3' miRNA: 3'- cGGCUUCCGCGUgUCuu--UGGCUGaag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 8647 | 0.7 | 0.616684 |
Target: 5'- uGCgCGAcggcGGGCGCACAGcgGAugCGGCg-- -3' miRNA: 3'- -CG-GCU----UCCGCGUGUC--UUugGCUGaag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 18215 | 0.7 | 0.627924 |
Target: 5'- -aCGAcGGCGCACAGAuucagcaacGGCCGAUc-- -3' miRNA: 3'- cgGCUuCCGCGUGUCU---------UUGGCUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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