miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24905 5' -52.4 NC_005284.1 + 361 0.69 0.695069
Target:  5'- uGCCGuAGGcCGCACAGAa---GAUUUCu -3'
miRNA:   3'- -CGGCuUCC-GCGUGUCUuuggCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 535 0.67 0.810306
Target:  5'- cGCCGAccAGGCGCu-----GCCGGCUc- -3'
miRNA:   3'- -CGGCU--UCCGCGugucuuUGGCUGAag -5'
24905 5' -52.4 NC_005284.1 + 1260 0.67 0.780562
Target:  5'- aCUGcGGGCGCGaacaucgAGggGCCGuGCUUCg -3'
miRNA:   3'- cGGCuUCCGCGUg------UCuuUGGC-UGAAG- -5'
24905 5' -52.4 NC_005284.1 + 1813 0.69 0.717066
Target:  5'- uGCuCGAAacGGaugGCGCGGAGAUCGACUaUCg -3'
miRNA:   3'- -CG-GCUU--CCg--CGUGUCUUUGGCUGA-AG- -5'
24905 5' -52.4 NC_005284.1 + 4813 1.13 0.001018
Target:  5'- aGCCGAAGGCGCACAGAAACCGACUUCg -3'
miRNA:   3'- -CGGCUUCCGCGUGUCUUUGGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 6536 0.7 0.661626
Target:  5'- -aCGAAGGCGCuCAGgcGCgCGACa-- -3'
miRNA:   3'- cgGCUUCCGCGuGUCuuUG-GCUGaag -5'
24905 5' -52.4 NC_005284.1 + 8647 0.7 0.616684
Target:  5'- uGCgCGAcggcGGGCGCACAGcgGAugCGGCg-- -3'
miRNA:   3'- -CG-GCU----UCCGCGUGUC--UUugGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 9748 0.69 0.706105
Target:  5'- uGCCGAAGcGCGgGCGGucGAGgCGACggCg -3'
miRNA:   3'- -CGGCUUC-CGCgUGUC--UUUgGCUGaaG- -5'
24905 5' -52.4 NC_005284.1 + 9916 0.66 0.838296
Target:  5'- cGCCGcguAGGGCGUGCccguGAugcgcgcGCCGAUUUCc -3'
miRNA:   3'- -CGGC---UUCCGCGUGu---CUu------UGGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 10677 0.66 0.828255
Target:  5'- cGCCGcGGGCGCgaucgacACGGcGGGCCucGCUUCg -3'
miRNA:   3'- -CGGCuUCCGCG-------UGUC-UUUGGc-UGAAG- -5'
24905 5' -52.4 NC_005284.1 + 10764 0.67 0.790653
Target:  5'- cGCCGAGGGCGUuCGGcugcuuuCUGACg-- -3'
miRNA:   3'- -CGGCUUCCGCGuGUCuuu----GGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 11560 0.69 0.695069
Target:  5'- gGCUGAAGGaGCGCAGugcgcAGAUCGACg-- -3'
miRNA:   3'- -CGGCUUCCgCGUGUC-----UUUGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 11804 0.66 0.872412
Target:  5'- gGCCGAggcggagcAGGuCGCGCGcGAGCgCGGCUa- -3'
miRNA:   3'- -CGGCU--------UCC-GCGUGUcUUUG-GCUGAag -5'
24905 5' -52.4 NC_005284.1 + 12130 0.67 0.819845
Target:  5'- uGCCGucGGCGCgcucggugguGCGGcAAGCgCGGCUgUCg -3'
miRNA:   3'- -CGGCuuCCGCG----------UGUC-UUUG-GCUGA-AG- -5'
24905 5' -52.4 NC_005284.1 + 12242 0.67 0.810306
Target:  5'- aGCCGuAGGCGUuc--GAGCCGACa-- -3'
miRNA:   3'- -CGGCuUCCGCGugucUUUGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 13236 0.66 0.864253
Target:  5'- gGCaCGGAcGaCGCgaGCGGAAAcCCGACUUCc -3'
miRNA:   3'- -CG-GCUUcC-GCG--UGUCUUU-GGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 15491 0.72 0.506559
Target:  5'- cGCCGAGcgcGGCGuCGCGuuAcCCGACUUCg -3'
miRNA:   3'- -CGGCUU---CCGC-GUGUcuUuGGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 16400 0.66 0.871607
Target:  5'- uGCUGAAGGCGgGguGAAGCgcaucuaCGGCg-- -3'
miRNA:   3'- -CGGCUUCCGCgUguCUUUG-------GCUGaag -5'
24905 5' -52.4 NC_005284.1 + 16720 0.66 0.863423
Target:  5'- cGCCGuGGGUGCGCcaaauccAGAauacgcAACUGACUg- -3'
miRNA:   3'- -CGGCuUCCGCGUG-------UCU------UUGGCUGAag -5'
24905 5' -52.4 NC_005284.1 + 16989 0.7 0.638044
Target:  5'- cGCCGAAcGCGCACAcggcgacGAucGCCGACg-- -3'
miRNA:   3'- -CGGCUUcCGCGUGU-------CUu-UGGCUGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.