miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24906 5' -51 NC_005284.1 + 10959 0.66 0.930123
Target:  5'- cGCCGGACGagcggaCGcAUCaagUCGCUCGAa -3'
miRNA:   3'- cUGGUUUGCg-----GC-UAGcaaAGCGAGCU- -5'
24906 5' -51 NC_005284.1 + 5958 0.66 0.924278
Target:  5'- cGCCAcggcuGGCGCCGAUCcgaucgUCGCgaCGAu -3'
miRNA:   3'- cUGGU-----UUGCGGCUAGcaa---AGCGa-GCU- -5'
24906 5' -51 NC_005284.1 + 35867 0.66 0.924278
Target:  5'- -uUCAAGCGCCGccUGUUUCaGCUCu- -3'
miRNA:   3'- cuGGUUUGCGGCuaGCAAAG-CGAGcu -5'
24906 5' -51 NC_005284.1 + 8668 0.66 0.924278
Target:  5'- aGACCGcgcauGCGgCGGUCGUaUUCGgUCGu -3'
miRNA:   3'- -CUGGUu----UGCgGCUAGCA-AAGCgAGCu -5'
24906 5' -51 NC_005284.1 + 6838 0.66 0.924278
Target:  5'- cACCGAguuggcGCGCgCGAUCGaucgugUGCUCGGa -3'
miRNA:   3'- cUGGUU------UGCG-GCUAGCaaa---GCGAGCU- -5'
24906 5' -51 NC_005284.1 + 5163 0.66 0.924278
Target:  5'- cGACUggGCGUCGAUCGagUUGa-CGAa -3'
miRNA:   3'- -CUGGuuUGCGGCUAGCaaAGCgaGCU- -5'
24906 5' -51 NC_005284.1 + 4744 0.66 0.911717
Target:  5'- gGGCCAGACGUCG-UCGaguaGCaUCGAg -3'
miRNA:   3'- -CUGGUUUGCGGCuAGCaaagCG-AGCU- -5'
24906 5' -51 NC_005284.1 + 8835 0.66 0.902935
Target:  5'- cGCCGAACGCCGcugcggcggcuugugCGUaUUCGCggaUCGAa -3'
miRNA:   3'- cUGGUUUGCGGCua-------------GCA-AAGCG---AGCU- -5'
24906 5' -51 NC_005284.1 + 30363 0.67 0.898008
Target:  5'- cGAUCGAGCGCgaGggCGaugCGCUCGGc -3'
miRNA:   3'- -CUGGUUUGCGg-CuaGCaaaGCGAGCU- -5'
24906 5' -51 NC_005284.1 + 21997 0.67 0.890731
Target:  5'- cGAUCucGCGCUGAUCG--UCGCcggCGAc -3'
miRNA:   3'- -CUGGuuUGCGGCUAGCaaAGCGa--GCU- -5'
24906 5' -51 NC_005284.1 + 36062 0.67 0.890731
Target:  5'- gGAUCGGaucACGCUGAUUG-UUCGCgaagCGAg -3'
miRNA:   3'- -CUGGUU---UGCGGCUAGCaAAGCGa---GCU- -5'
24906 5' -51 NC_005284.1 + 9628 0.67 0.890731
Target:  5'- uGCCu-GCGCCGccUCGUgUUGCUUGAu -3'
miRNA:   3'- cUGGuuUGCGGCu-AGCAaAGCGAGCU- -5'
24906 5' -51 NC_005284.1 + 15323 0.67 0.883177
Target:  5'- cGGCaucgcgaAAugGgUGAUCGUgUCGCUCGGc -3'
miRNA:   3'- -CUGg------UUugCgGCUAGCAaAGCGAGCU- -5'
24906 5' -51 NC_005284.1 + 46433 0.67 0.883177
Target:  5'- gGAgCGAACGaaCCGAUCGccgUCGC-CGAa -3'
miRNA:   3'- -CUgGUUUGC--GGCUAGCaa-AGCGaGCU- -5'
24906 5' -51 NC_005284.1 + 35604 0.67 0.875354
Target:  5'- cGACCGcgacACGggaaucgcucuUCGAcggcuUCGUUUCGCUCGAa -3'
miRNA:   3'- -CUGGUu---UGC-----------GGCU-----AGCAAAGCGAGCU- -5'
24906 5' -51 NC_005284.1 + 34851 0.67 0.875354
Target:  5'- cGCaCAGGCGCaCGAUUGggaUCgGCUCGAc -3'
miRNA:   3'- cUG-GUUUGCG-GCUAGCaa-AG-CGAGCU- -5'
24906 5' -51 NC_005284.1 + 15361 0.67 0.875354
Target:  5'- aGGCCGAugGCuCGAUCGgcaUCGa-CGAc -3'
miRNA:   3'- -CUGGUUugCG-GCUAGCaa-AGCgaGCU- -5'
24906 5' -51 NC_005284.1 + 40734 0.67 0.867266
Target:  5'- gGGCCAGcaguACGCUGAUCGgg-UGCaugCGAu -3'
miRNA:   3'- -CUGGUU----UGCGGCUAGCaaaGCGa--GCU- -5'
24906 5' -51 NC_005284.1 + 7445 0.68 0.858922
Target:  5'- --aCGAACGCCaGAUCGgc-CGCgUCGAg -3'
miRNA:   3'- cugGUUUGCGG-CUAGCaaaGCG-AGCU- -5'
24906 5' -51 NC_005284.1 + 51225 0.68 0.850329
Target:  5'- cGCCAAGCGCUGcaCGUgUCGUUCa- -3'
miRNA:   3'- cUGGUUUGCGGCuaGCAaAGCGAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.