miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24913 3' -48.3 NC_005284.1 + 9973 1.03 0.013584
Target:  5'- cACGAUCG-CAAAGCGCGUUAUACGGCg -3'
miRNA:   3'- -UGCUAGCuGUUUCGCGCAAUAUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 49273 0.78 0.460528
Target:  5'- gGCGAcgUGACGAAGCGCGcuucACGGCc -3'
miRNA:   3'- -UGCUa-GCUGUUUCGCGCaauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 4633 0.78 0.481562
Target:  5'- gACGGUCGGCAGcGGCGUGa---GCGGCa -3'
miRNA:   3'- -UGCUAGCUGUU-UCGCGCaauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 43375 0.78 0.492252
Target:  5'- cGCGAUCGACGcAGCGCGUcaagucccgcgcUGUcgaGGCg -3'
miRNA:   3'- -UGCUAGCUGUuUCGCGCA------------AUAug-CCG- -5'
24913 3' -48.3 NC_005284.1 + 17071 0.77 0.534919
Target:  5'- gGCGAUCGuCGccguguGCGCGUUcggcgugAUGCGGCg -3'
miRNA:   3'- -UGCUAGCuGUuu----CGCGCAA-------UAUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 206 0.77 0.547195
Target:  5'- cGCGGggcaUGugGGAGCGCGUUGUGCcGCu -3'
miRNA:   3'- -UGCUa---GCugUUUCGCGCAAUAUGcCG- -5'
24913 3' -48.3 NC_005284.1 + 10113 0.76 0.58109
Target:  5'- gACGG-CGACcgAAAGCGCGgcg-ACGGCg -3'
miRNA:   3'- -UGCUaGCUG--UUUCGCGCaauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 18207 0.73 0.717931
Target:  5'- gGCGAUCGACGAcGGCGCacagAUucagcaACGGCc -3'
miRNA:   3'- -UGCUAGCUGUU-UCGCGcaa-UA------UGCCG- -5'
24913 3' -48.3 NC_005284.1 + 45128 0.73 0.717931
Target:  5'- uGCGAUCGucgagcugauggGCAAGGCGUGgucgacgcACGGCg -3'
miRNA:   3'- -UGCUAGC------------UGUUUCGCGCaaua----UGCCG- -5'
24913 3' -48.3 NC_005284.1 + 18372 0.73 0.765898
Target:  5'- cUGAUCGACcaccgaguaugucgaGAGGCGgaCGUUcgACGGCg -3'
miRNA:   3'- uGCUAGCUG---------------UUUCGC--GCAAuaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 21330 0.72 0.772239
Target:  5'- gGCGAcUGGCGGGGCGCGUgu--CGcGCg -3'
miRNA:   3'- -UGCUaGCUGUUUCGCGCAauauGC-CG- -5'
24913 3' -48.3 NC_005284.1 + 19031 0.72 0.782679
Target:  5'- gGCGAUCGcCGAGG-GCG--AUAUGGCg -3'
miRNA:   3'- -UGCUAGCuGUUUCgCGCaaUAUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 18577 0.72 0.791931
Target:  5'- cCGGaaUCGACGucacgccGAGCGCGUUcu-CGGCg -3'
miRNA:   3'- uGCU--AGCUGU-------UUCGCGCAAuauGCCG- -5'
24913 3' -48.3 NC_005284.1 + 47365 0.72 0.79295
Target:  5'- aGCGAUCc-CGAAGCGCGUcAUGC-GCg -3'
miRNA:   3'- -UGCUAGcuGUUUCGCGCAaUAUGcCG- -5'
24913 3' -48.3 NC_005284.1 + 9004 0.72 0.803038
Target:  5'- cACGAUCaGCAAGGCggucGCGUUGUcgggugucuCGGCa -3'
miRNA:   3'- -UGCUAGcUGUUUCG----CGCAAUAu--------GCCG- -5'
24913 3' -48.3 NC_005284.1 + 19395 0.72 0.803038
Target:  5'- gUGAUCGACGAGG-GCG--GUGCaGGCg -3'
miRNA:   3'- uGCUAGCUGUUUCgCGCaaUAUG-CCG- -5'
24913 3' -48.3 NC_005284.1 + 12034 0.72 0.81683
Target:  5'- cAUGAUCGcCGAccucgcgcgguuuucGGCGCGU---GCGGCg -3'
miRNA:   3'- -UGCUAGCuGUU---------------UCGCGCAauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 6575 0.71 0.822617
Target:  5'- gUGAUCcguGACGAGGCGCGUaa-GCGcGCg -3'
miRNA:   3'- uGCUAG---CUGUUUCGCGCAauaUGC-CG- -5'
24913 3' -48.3 NC_005284.1 + 48958 0.71 0.832085
Target:  5'- gGCGGacugcaUCGACGAAGCG-GUgcugcGCGGCu -3'
miRNA:   3'- -UGCU------AGCUGUUUCGCgCAaua--UGCCG- -5'
24913 3' -48.3 NC_005284.1 + 15724 0.71 0.832085
Target:  5'- gGCGucuGUCGACGc-GCGCGgUGUGgGGCg -3'
miRNA:   3'- -UGC---UAGCUGUuuCGCGCaAUAUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.