Results 1 - 20 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24913 | 3' | -48.3 | NC_005284.1 | + | 8642 | 0.71 | 0.859073 |
Target: 5'- uGCGGUgcgCGACGgcGGGCGCacagcggAUGCGGCg -3' miRNA: 3'- -UGCUA---GCUGU--UUCGCGcaa----UAUGCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 9004 | 0.72 | 0.803038 |
Target: 5'- cACGAUCaGCAAGGCggucGCGUUGUcgggugucuCGGCa -3' miRNA: 3'- -UGCUAGcUGUUUCG----CGCAAUAu--------GCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 12034 | 0.72 | 0.81683 |
Target: 5'- cAUGAUCGcCGAccucgcgcgguuuucGGCGCGU---GCGGCg -3' miRNA: 3'- -UGCUAGCuGUU---------------UCGCGCAauaUGCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 6575 | 0.71 | 0.822617 |
Target: 5'- gUGAUCcguGACGAGGCGCGUaa-GCGcGCg -3' miRNA: 3'- uGCUAG---CUGUUUCGCGCAauaUGC-CG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 48958 | 0.71 | 0.832085 |
Target: 5'- gGCGGacugcaUCGACGAAGCG-GUgcugcGCGGCu -3' miRNA: 3'- -UGCU------AGCUGUUUCGCgCAaua--UGCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 15724 | 0.71 | 0.832085 |
Target: 5'- gGCGucuGUCGACGc-GCGCGgUGUGgGGCg -3' miRNA: 3'- -UGC---UAGCUGUuuCGCGCaAUAUgCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 16854 | 0.71 | 0.835808 |
Target: 5'- uCGGUCGACGgcgggucguaugcgcAggugcuggccGGUGCGUUcgACGGCa -3' miRNA: 3'- uGCUAGCUGU---------------U----------UCGCGCAAuaUGCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 17675 | 0.71 | 0.850323 |
Target: 5'- gACGA-CGACGGGaucGCGCG--AUAUGGCg -3' miRNA: 3'- -UGCUaGCUGUUU---CGCGCaaUAUGCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 51710 | 0.71 | 0.850323 |
Target: 5'- cGCGAgccauaUGACAuacAAGCGCG-UGUACGGa -3' miRNA: 3'- -UGCUa-----GCUGU---UUCGCGCaAUAUGCCg -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 19395 | 0.72 | 0.803038 |
Target: 5'- gUGAUCGACGAGG-GCG--GUGCaGGCg -3' miRNA: 3'- uGCUAGCUGUUUCgCGCaaUAUG-CCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 47365 | 0.72 | 0.79295 |
Target: 5'- aGCGAUCc-CGAAGCGCGUcAUGC-GCg -3' miRNA: 3'- -UGCUAGcuGUUUCGCGCAaUAUGcCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 19031 | 0.72 | 0.782679 |
Target: 5'- gGCGAUCGcCGAGG-GCG--AUAUGGCg -3' miRNA: 3'- -UGCUAGCuGUUUCgCGCaaUAUGCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 49273 | 0.78 | 0.460528 |
Target: 5'- gGCGAcgUGACGAAGCGCGcuucACGGCc -3' miRNA: 3'- -UGCUa-GCUGUUUCGCGCaauaUGCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 4633 | 0.78 | 0.481562 |
Target: 5'- gACGGUCGGCAGcGGCGUGa---GCGGCa -3' miRNA: 3'- -UGCUAGCUGUU-UCGCGCaauaUGCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 43375 | 0.78 | 0.492252 |
Target: 5'- cGCGAUCGACGcAGCGCGUcaagucccgcgcUGUcgaGGCg -3' miRNA: 3'- -UGCUAGCUGUuUCGCGCA------------AUAug-CCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 206 | 0.77 | 0.547195 |
Target: 5'- cGCGGggcaUGugGGAGCGCGUUGUGCcGCu -3' miRNA: 3'- -UGCUa---GCugUUUCGCGCAAUAUGcCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 10113 | 0.76 | 0.58109 |
Target: 5'- gACGG-CGACcgAAAGCGCGgcg-ACGGCg -3' miRNA: 3'- -UGCUaGCUG--UUUCGCGCaauaUGCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 45128 | 0.73 | 0.717931 |
Target: 5'- uGCGAUCGucgagcugauggGCAAGGCGUGgucgacgcACGGCg -3' miRNA: 3'- -UGCUAGC------------UGUUUCGCGCaaua----UGCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 18207 | 0.73 | 0.717931 |
Target: 5'- gGCGAUCGACGAcGGCGCacagAUucagcaACGGCc -3' miRNA: 3'- -UGCUAGCUGUU-UCGCGcaa-UA------UGCCG- -5' |
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24913 | 3' | -48.3 | NC_005284.1 | + | 21330 | 0.72 | 0.772239 |
Target: 5'- gGCGAcUGGCGGGGCGCGUgu--CGcGCg -3' miRNA: 3'- -UGCUaGCUGUUUCGCGCAauauGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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