miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24913 3' -48.3 NC_005284.1 + 206 0.77 0.547195
Target:  5'- cGCGGggcaUGugGGAGCGCGUUGUGCcGCu -3'
miRNA:   3'- -UGCUa---GCugUUUCGCGCAAUAUGcCG- -5'
24913 3' -48.3 NC_005284.1 + 1364 0.66 0.982903
Target:  5'- gACGAUCGACGaagggGAcgauuggaccgauccGCGCGUgc--UGGCg -3'
miRNA:   3'- -UGCUAGCUGU-----UU---------------CGCGCAauauGCCG- -5'
24913 3' -48.3 NC_005284.1 + 1628 0.67 0.964272
Target:  5'- cGCGcUCGACAuGGCGCGcaagcucgauUUgaacaGUAUGGCc -3'
miRNA:   3'- -UGCuAGCUGUuUCGCGC----------AA-----UAUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 3247 0.66 0.983963
Target:  5'- gACGGUcccugcugaggcCGGgAGAGCGCGaucaguuUUAUGCGGa -3'
miRNA:   3'- -UGCUA------------GCUgUUUCGCGC-------AAUAUGCCg -5'
24913 3' -48.3 NC_005284.1 + 3830 0.66 0.983545
Target:  5'- -gGAUCGACGAAGCGCcgaacgcaaggaucGcgUAUcGCGGa -3'
miRNA:   3'- ugCUAGCUGUUUCGCG--------------Ca-AUA-UGCCg -5'
24913 3' -48.3 NC_005284.1 + 4633 0.78 0.481562
Target:  5'- gACGGUCGGCAGcGGCGUGa---GCGGCa -3'
miRNA:   3'- -UGCUAGCUGUU-UCGCGCaauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 4664 0.66 0.982017
Target:  5'- uGCGAUCGACGcgAAcGCGCacugauuUGCGcGCg -3'
miRNA:   3'- -UGCUAGCUGU--UU-CGCGcaau---AUGC-CG- -5'
24913 3' -48.3 NC_005284.1 + 5144 0.71 0.850323
Target:  5'- uCGAUCGGCGucgcauucgcGAGCGUGaUGgAUGGCa -3'
miRNA:   3'- uGCUAGCUGU----------UUCGCGCaAUaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 6575 0.71 0.822617
Target:  5'- gUGAUCcguGACGAGGCGCGUaa-GCGcGCg -3'
miRNA:   3'- uGCUAG---CUGUUUCGCGCAauaUGC-CG- -5'
24913 3' -48.3 NC_005284.1 + 6809 0.68 0.931277
Target:  5'- uCGAUCGGCGAGGC-CGag--GgGGCg -3'
miRNA:   3'- uGCUAGCUGUUUCGcGCaauaUgCCG- -5'
24913 3' -48.3 NC_005284.1 + 6813 0.68 0.942168
Target:  5'- cCGAacUCGuCGAAGCGCcaauaaaacgcGUUGUuCGGCg -3'
miRNA:   3'- uGCU--AGCuGUUUCGCG-----------CAAUAuGCCG- -5'
24913 3' -48.3 NC_005284.1 + 6853 0.68 0.947167
Target:  5'- cGCGAUCGAUcguGUGCucggaggGCGGCg -3'
miRNA:   3'- -UGCUAGCUGuuuCGCGcaaua--UGCCG- -5'
24913 3' -48.3 NC_005284.1 + 6920 0.67 0.964272
Target:  5'- cACGAUCGAUcgcGCGCGccaacuCGGUg -3'
miRNA:   3'- -UGCUAGCUGuuuCGCGCaauau-GCCG- -5'
24913 3' -48.3 NC_005284.1 + 7073 0.67 0.971175
Target:  5'- gGCGAgCGcCAugucGAGCGCGccaUGUACGcGCg -3'
miRNA:   3'- -UGCUaGCuGU----UUCGCGCa--AUAUGC-CG- -5'
24913 3' -48.3 NC_005284.1 + 7543 0.67 0.966808
Target:  5'- gACGAagGGCAAAacauucugcgugccGCGCGUgcgACGGg -3'
miRNA:   3'- -UGCUagCUGUUU--------------CGCGCAauaUGCCg -5'
24913 3' -48.3 NC_005284.1 + 7635 0.67 0.956287
Target:  5'- --cGUCGGCAuGGUGCGUcaguacacgUGgGCGGCg -3'
miRNA:   3'- ugcUAGCUGUuUCGCGCA---------AUaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 7689 0.67 0.967855
Target:  5'- gGCGA-CGuACAGcguGCGCGUga-GCGGUg -3'
miRNA:   3'- -UGCUaGC-UGUUu--CGCGCAauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 8455 0.66 0.977065
Target:  5'- cGCGA-CGGCGGAGgGagaGgaagGCGGCg -3'
miRNA:   3'- -UGCUaGCUGUUUCgCg--CaauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 8642 0.71 0.859073
Target:  5'- uGCGGUgcgCGACGgcGGGCGCacagcggAUGCGGCg -3'
miRNA:   3'- -UGCUA---GCUGU--UUCGCGcaa----UAUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 8681 0.68 0.931277
Target:  5'- gGCcGUCGACGAGagaccGCGC---AUGCGGCg -3'
miRNA:   3'- -UGcUAGCUGUUU-----CGCGcaaUAUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.