miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24930 5' -58 NC_005284.1 + 48977 0.66 0.584176
Target:  5'- gCGGUgcuGCGCGGCuGGaCGGGGCuGUUCc -3'
miRNA:   3'- -GCCGu--CGUGUUG-CC-GCUCCGcCAAGu -5'
24930 5' -58 NC_005284.1 + 11790 0.66 0.584176
Target:  5'- ---gAGCGCAucaacACGGcCGAGGCGGagCAg -3'
miRNA:   3'- gccgUCGUGU-----UGCC-GCUCCGCCaaGU- -5'
24930 5' -58 NC_005284.1 + 30530 0.66 0.584176
Target:  5'- cCGGCAGCACAcgaauCGGCGAcucGCGa---- -3'
miRNA:   3'- -GCCGUCGUGUu----GCCGCUc--CGCcaagu -5'
24930 5' -58 NC_005284.1 + 36650 0.66 0.552122
Target:  5'- aGaGCGGaCGCu-CGGCGGuGGCGGUUgGg -3'
miRNA:   3'- gC-CGUC-GUGuuGCCGCU-CCGCCAAgU- -5'
24930 5' -58 NC_005284.1 + 48981 0.66 0.541551
Target:  5'- aGGCGGCGCAGCGacaccuucgccGCcGGGCGuGUcCAc -3'
miRNA:   3'- gCCGUCGUGUUGC-----------CGcUCCGC-CAaGU- -5'
24930 5' -58 NC_005284.1 + 26558 0.67 0.520619
Target:  5'- gGGCAGUAgGuggcCGGCGAGaGUGGcgUUCGc -3'
miRNA:   3'- gCCGUCGUgUu---GCCGCUC-CGCC--AAGU- -5'
24930 5' -58 NC_005284.1 + 32800 0.67 0.520619
Target:  5'- uCGGCcuGCGCGGguuGCGGGGCGGcgUCGg -3'
miRNA:   3'- -GCCGu-CGUGUUgc-CGCUCCGCCa-AGU- -5'
24930 5' -58 NC_005284.1 + 16178 0.67 0.510272
Target:  5'- uCGGC-GCGuCGAUGGCGcuGGGCGGcaUCGu -3'
miRNA:   3'- -GCCGuCGU-GUUGCCGC--UCCGCCa-AGU- -5'
24930 5' -58 NC_005284.1 + 47742 0.67 0.489844
Target:  5'- uCGGCGGUACGGCGGCGc-GCGuacgUCc -3'
miRNA:   3'- -GCCGUCGUGUUGCCGCucCGCca--AGu -5'
24930 5' -58 NC_005284.1 + 49107 0.67 0.479773
Target:  5'- uCGaGCAGCGCGAgGGCGAaGU-GUUCAu -3'
miRNA:   3'- -GC-CGUCGUGUUgCCGCUcCGcCAAGU- -5'
24930 5' -58 NC_005284.1 + 25438 0.68 0.454079
Target:  5'- gGGCGGCgGCAACGGCaaaccacccaugcuAGGCGGggaagCAg -3'
miRNA:   3'- gCCGUCG-UGUUGCCGc-------------UCCGCCaa---GU- -5'
24930 5' -58 NC_005284.1 + 8643 0.68 0.450193
Target:  5'- gCGGU-GCGCGACGGCGGGcgcacaGCGGa--- -3'
miRNA:   3'- -GCCGuCGUGUUGCCGCUC------CGCCaagu -5'
24930 5' -58 NC_005284.1 + 32533 0.68 0.4396
Target:  5'- aGGCucGCcacccucGCGGCgGGCGGGGCGGUg-- -3'
miRNA:   3'- gCCGu-CG-------UGUUG-CCGCUCCGCCAagu -5'
24930 5' -58 NC_005284.1 + 19637 0.68 0.43104
Target:  5'- gCGGguGUACGACGGCaacGGCGuGcUUCGc -3'
miRNA:   3'- -GCCguCGUGUUGCCGcu-CCGC-C-AAGU- -5'
24930 5' -58 NC_005284.1 + 15948 0.68 0.43104
Target:  5'- -uGCGGCGacgaGACGGCaAGGCGGUg-- -3'
miRNA:   3'- gcCGUCGUg---UUGCCGcUCCGCCAagu -5'
24930 5' -58 NC_005284.1 + 33447 0.68 0.412372
Target:  5'- uCGGCAGCGC--CGGCcgacgaacGGGCGGUgUCGu -3'
miRNA:   3'- -GCCGUCGUGuuGCCGc-------UCCGCCA-AGU- -5'
24930 5' -58 NC_005284.1 + 45715 0.69 0.40687
Target:  5'- aCGGCuGUACAucuucGCGGCcagaaacuucucuggGAGGCGGUg-- -3'
miRNA:   3'- -GCCGuCGUGU-----UGCCG---------------CUCCGCCAagu -5'
24930 5' -58 NC_005284.1 + 33339 0.69 0.403228
Target:  5'- gCGGCAGCAUcgcccACuGCgGAGGCGGUg-- -3'
miRNA:   3'- -GCCGUCGUGu----UGcCG-CUCCGCCAagu -5'
24930 5' -58 NC_005284.1 + 19027 0.69 0.38533
Target:  5'- aGGCGGCGaucgcCGAgGGCGAuauGGCGGUcgCGa -3'
miRNA:   3'- gCCGUCGU-----GUUgCCGCU---CCGCCAa-GU- -5'
24930 5' -58 NC_005284.1 + 50300 0.7 0.351145
Target:  5'- aGGCuGCugAACGGCGAauGCGGcuUUCGu -3'
miRNA:   3'- gCCGuCGugUUGCCGCUc-CGCC--AAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.