Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 21563 | 1.09 | 0.00023 |
Target: 5'- gACGAGCAGGCCGCGCGGGCGUUCGACg -3' miRNA: 3'- -UGCUCGUCCGGCGCGCCCGCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 10749 | 0.75 | 0.083966 |
Target: 5'- uGCGgcaaGGgGGGCCGCcgaGGGCGUUCGGCu -3' miRNA: 3'- -UGC----UCgUCCGGCGcg-CCCGCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 12544 | 0.73 | 0.1196 |
Target: 5'- cGCGAuCAGGCU-CGCGGG-GUUCGACg -3' miRNA: 3'- -UGCUcGUCCGGcGCGCCCgCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 11813 | 0.72 | 0.156115 |
Target: 5'- -gGAGCAGGUCGCGCGcGaGCG--CGGCu -3' miRNA: 3'- ugCUCGUCCGGCGCGC-C-CGCaaGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 47807 | 0.71 | 0.164538 |
Target: 5'- gGCGAGCGcuuGGCgGCGCugcgauGGGUGcUCGGCa -3' miRNA: 3'- -UGCUCGU---CCGgCGCG------CCCGCaAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 8097 | 0.7 | 0.213021 |
Target: 5'- gACGAuGCAaccgcGGUCGCG-GcGGCGUUCGGCc -3' miRNA: 3'- -UGCU-CGU-----CCGGCGCgC-CCGCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 9739 | 0.7 | 0.213021 |
Target: 5'- aGCGaAGCuuGCCgaaGCGCGGGCGgUCGAg -3' miRNA: 3'- -UGC-UCGucCGG---CGCGCCCGCaAGCUg -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 9929 | 0.69 | 0.229797 |
Target: 5'- cGCGAGCGaugaucGCCGCGUaGGGCGUgcccgUGAUg -3' miRNA: 3'- -UGCUCGUc-----CGGCGCG-CCCGCAa----GCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 16860 | 0.69 | 0.233869 |
Target: 5'- gACG-GCGGGUCGUaugcgcaggugcugGcCGGuGCGUUCGACg -3' miRNA: 3'- -UGCuCGUCCGGCG--------------C-GCC-CGCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 14516 | 0.69 | 0.235632 |
Target: 5'- cGCGcAGCAGccaucGCCGacgcuGCGGGUGggCGACa -3' miRNA: 3'- -UGC-UCGUC-----CGGCg----CGCCCGCaaGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 26930 | 0.68 | 0.260223 |
Target: 5'- gGCGAuGC--GCCGgGCGGGCGUcgucuggCGACu -3' miRNA: 3'- -UGCU-CGucCGGCgCGCCCGCAa------GCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 8697 | 0.68 | 0.260223 |
Target: 5'- aGCGuGCAGGUCacgGUGCGcGCGcUCGACg -3' miRNA: 3'- -UGCuCGUCCGG---CGCGCcCGCaAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 14705 | 0.68 | 0.273284 |
Target: 5'- cACGGcGUcgAGGUagCGCGCGaGCGUUCGGCg -3' miRNA: 3'- -UGCU-CG--UCCG--GCGCGCcCGCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 26555 | 0.68 | 0.273284 |
Target: 5'- gGCGGGCAguagguGGCCgGCGagaGuGGCGUUCGcCa -3' miRNA: 3'- -UGCUCGU------CCGG-CGCg--C-CCGCAAGCuG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 46700 | 0.68 | 0.286173 |
Target: 5'- uACGuccGCAGacacugaacgcccGCCGCuCGGGaCGUUCGGCg -3' miRNA: 3'- -UGCu--CGUC-------------CGGCGcGCCC-GCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 38915 | 0.68 | 0.286865 |
Target: 5'- gGCGGGCGGGuuGguuagGCGGcuuccCGUUCGGCg -3' miRNA: 3'- -UGCUCGUCCggCg----CGCCc----GCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 9490 | 0.68 | 0.293853 |
Target: 5'- gGCGAcGCAGGCgGCGacaGCGUgggUCGGCg -3' miRNA: 3'- -UGCU-CGUCCGgCGCgccCGCA---AGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 48829 | 0.68 | 0.293853 |
Target: 5'- cGCGGcGCAcGCCGCGCGGGUugaugGUUCu-- -3' miRNA: 3'- -UGCU-CGUcCGGCGCGCCCG-----CAAGcug -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 53872 | 0.68 | 0.300973 |
Target: 5'- uCGAGCAcagcGGCCGgGaUGGGCGgccgUCGuCg -3' miRNA: 3'- uGCUCGU----CCGGCgC-GCCCGCa---AGCuG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 48980 | 0.68 | 0.300973 |
Target: 5'- gGCGGcGCAGcgacaccuucGCCGC-CGGGCGUguccaCGGCg -3' miRNA: 3'- -UGCU-CGUC----------CGGCGcGCCCGCAa----GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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