Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 1093 | 0.67 | 0.308225 |
Target: 5'- gGCGAGCGcuucaccaucaGCCGCGcCGGGCGaaaGACc -3' miRNA: 3'- -UGCUCGUc----------CGGCGC-GCCCGCaagCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 5506 | 0.67 | 0.330778 |
Target: 5'- ---uGguGGCCGCccGCGGGCGgucauuuuUUUGACa -3' miRNA: 3'- ugcuCguCCGGCG--CGCCCGC--------AAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 8097 | 0.7 | 0.213021 |
Target: 5'- gACGAuGCAaccgcGGUCGCG-GcGGCGUUCGGCc -3' miRNA: 3'- -UGCU-CGU-----CCGGCGCgC-CCGCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 8697 | 0.68 | 0.260223 |
Target: 5'- aGCGuGCAGGUCacgGUGCGcGCGcUCGACg -3' miRNA: 3'- -UGCuCGUCCGG---CGCGCcCGCaAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 8745 | 0.67 | 0.323128 |
Target: 5'- cGCGAauacGCAcaaGCCGcCGCaGcGGCGUUCGGCg -3' miRNA: 3'- -UGCU----CGUc--CGGC-GCG-C-CCGCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 9490 | 0.68 | 0.293853 |
Target: 5'- gGCGAcGCAGGCgGCGacaGCGUgggUCGGCg -3' miRNA: 3'- -UGCU-CGUCCGgCGCgccCGCA---AGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 9562 | 0.66 | 0.384569 |
Target: 5'- gGCGGcGCAGGCagcgcucgccaaaGCGCaGGGCGaUCGcGCu -3' miRNA: 3'- -UGCU-CGUCCGg------------CGCG-CCCGCaAGC-UG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 9637 | 0.66 | 0.354523 |
Target: 5'- gGCGGaggcuucagcGCAGGCCGagcuCGCGGGCaugCGAg -3' miRNA: 3'- -UGCU----------CGUCCGGC----GCGCCCGcaaGCUg -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 9739 | 0.7 | 0.213021 |
Target: 5'- aGCGaAGCuuGCCgaaGCGCGGGCGgUCGAg -3' miRNA: 3'- -UGC-UCGucCGG---CGCGCCCGCaAGCUg -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 9929 | 0.69 | 0.229797 |
Target: 5'- cGCGAGCGaugaucGCCGCGUaGGGCGUgcccgUGAUg -3' miRNA: 3'- -UGCUCGUc-----CGGCGCG-CCCGCAa----GCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 10070 | 0.67 | 0.338561 |
Target: 5'- aGCGAGCGGaaCGCGCGGcgaccGCGaccgCGGCg -3' miRNA: 3'- -UGCUCGUCcgGCGCGCC-----CGCaa--GCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 10660 | 0.66 | 0.388009 |
Target: 5'- cGCGAGgaacuGGuGCgCGcCGCGGGCGcgaUCGACa -3' miRNA: 3'- -UGCUCg----UC-CG-GC-GCGCCCGCa--AGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 10749 | 0.75 | 0.083966 |
Target: 5'- uGCGgcaaGGgGGGCCGCcgaGGGCGUUCGGCu -3' miRNA: 3'- -UGC----UCgUCCGGCGcg-CCCGCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 11813 | 0.72 | 0.156115 |
Target: 5'- -gGAGCAGGUCGCGCGcGaGCG--CGGCu -3' miRNA: 3'- ugCUCGUCCGGCGCGC-C-CGCaaGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 11855 | 0.67 | 0.338561 |
Target: 5'- cGCGuuGCAGGCCgacugGCGCGucGGCGUgaagcgggCGAUg -3' miRNA: 3'- -UGCu-CGUCCGG-----CGCGC--CCGCAa-------GCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 12544 | 0.73 | 0.1196 |
Target: 5'- cGCGAuCAGGCU-CGCGGG-GUUCGACg -3' miRNA: 3'- -UGCUcGUCCGGcGCGCCCgCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 14463 | 0.67 | 0.346476 |
Target: 5'- aACGAGUAcaagccguGGCCGauacaggcCGCGGGC-UUCGAg -3' miRNA: 3'- -UGCUCGU--------CCGGC--------GCGCCCGcAAGCUg -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 14516 | 0.69 | 0.235632 |
Target: 5'- cGCGcAGCAGccaucGCCGacgcuGCGGGUGggCGACa -3' miRNA: 3'- -UGC-UCGUC-----CGGCg----CGCCCGCaaGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 14705 | 0.68 | 0.273284 |
Target: 5'- cACGGcGUcgAGGUagCGCGCGaGCGUUCGGCg -3' miRNA: 3'- -UGCU-CG--UCCG--GCGCGCcCGCAAGCUG- -5' |
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24931 | 5' | -61.9 | NC_005284.1 | + | 16678 | 0.66 | 0.371008 |
Target: 5'- uCGAGCgugAGGCCgGCGUcGGCGUgccgcUGACg -3' miRNA: 3'- uGCUCG---UCCGG-CGCGcCCGCAa----GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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