miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24931 5' -61.9 NC_005284.1 + 42972 0.67 0.346476
Target:  5'- -gGAGUuuGCCGCGgGGGCGUU--GCa -3'
miRNA:   3'- ugCUCGucCGGCGCgCCCGCAAgcUG- -5'
24931 5' -61.9 NC_005284.1 + 9490 0.68 0.293853
Target:  5'- gGCGAcGCAGGCgGCGacaGCGUgggUCGGCg -3'
miRNA:   3'- -UGCU-CGUCCGgCGCgccCGCA---AGCUG- -5'
24931 5' -61.9 NC_005284.1 + 53872 0.68 0.300973
Target:  5'- uCGAGCAcagcGGCCGgGaUGGGCGgccgUCGuCg -3'
miRNA:   3'- uGCUCGU----CCGGCgC-GCCCGCa---AGCuG- -5'
24931 5' -61.9 NC_005284.1 + 23888 0.67 0.31561
Target:  5'- aGCGAGCGGGgCaGUGCuGGGgGaUCGAg -3'
miRNA:   3'- -UGCUCGUCCgG-CGCG-CCCgCaAGCUg -5'
24931 5' -61.9 NC_005284.1 + 19401 0.67 0.323128
Target:  5'- gACGA--GGGCgGUGCaGGCGUgaUCGGCg -3'
miRNA:   3'- -UGCUcgUCCGgCGCGcCCGCA--AGCUG- -5'
24931 5' -61.9 NC_005284.1 + 8745 0.67 0.323128
Target:  5'- cGCGAauacGCAcaaGCCGcCGCaGcGGCGUUCGGCg -3'
miRNA:   3'- -UGCU----CGUc--CGGC-GCG-C-CCGCAAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 5506 0.67 0.330778
Target:  5'- ---uGguGGCCGCccGCGGGCGgucauuuuUUUGACa -3'
miRNA:   3'- ugcuCguCCGGCG--CGCCCGC--------AAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 10070 0.67 0.338561
Target:  5'- aGCGAGCGGaaCGCGCGGcgaccGCGaccgCGGCg -3'
miRNA:   3'- -UGCUCGUCcgGCGCGCC-----CGCaa--GCUG- -5'
24931 5' -61.9 NC_005284.1 + 11855 0.67 0.338561
Target:  5'- cGCGuuGCAGGCCgacugGCGCGucGGCGUgaagcgggCGAUg -3'
miRNA:   3'- -UGCu-CGUCCGG-----CGCGC--CCGCAa-------GCUG- -5'
24931 5' -61.9 NC_005284.1 + 38915 0.68 0.286865
Target:  5'- gGCGGGCGGGuuGguuagGCGGcuuccCGUUCGGCg -3'
miRNA:   3'- -UGCUCGUCCggCg----CGCCc----GCAAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 26555 0.68 0.273284
Target:  5'- gGCGGGCAguagguGGCCgGCGagaGuGGCGUUCGcCa -3'
miRNA:   3'- -UGCUCGU------CCGG-CGCg--C-CCGCAAGCuG- -5'
24931 5' -61.9 NC_005284.1 + 26930 0.68 0.260223
Target:  5'- gGCGAuGC--GCCGgGCGGGCGUcgucuggCGACu -3'
miRNA:   3'- -UGCU-CGucCGGCgCGCCCGCAa------GCUG- -5'
24931 5' -61.9 NC_005284.1 + 10749 0.75 0.083966
Target:  5'- uGCGgcaaGGgGGGCCGCcgaGGGCGUUCGGCu -3'
miRNA:   3'- -UGC----UCgUCCGGCGcg-CCCGCAAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 11813 0.72 0.156115
Target:  5'- -gGAGCAGGUCGCGCGcGaGCG--CGGCu -3'
miRNA:   3'- ugCUCGUCCGGCGCGC-C-CGCaaGCUG- -5'
24931 5' -61.9 NC_005284.1 + 47807 0.71 0.164538
Target:  5'- gGCGAGCGcuuGGCgGCGCugcgauGGGUGcUCGGCa -3'
miRNA:   3'- -UGCUCGU---CCGgCGCG------CCCGCaAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 8097 0.7 0.213021
Target:  5'- gACGAuGCAaccgcGGUCGCG-GcGGCGUUCGGCc -3'
miRNA:   3'- -UGCU-CGU-----CCGGCGCgC-CCGCAAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 9739 0.7 0.213021
Target:  5'- aGCGaAGCuuGCCgaaGCGCGGGCGgUCGAg -3'
miRNA:   3'- -UGC-UCGucCGG---CGCGCCCGCaAGCUg -5'
24931 5' -61.9 NC_005284.1 + 16860 0.69 0.233869
Target:  5'- gACG-GCGGGUCGUaugcgcaggugcugGcCGGuGCGUUCGACg -3'
miRNA:   3'- -UGCuCGUCCGGCG--------------C-GCC-CGCAAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 14516 0.69 0.235632
Target:  5'- cGCGcAGCAGccaucGCCGacgcuGCGGGUGggCGACa -3'
miRNA:   3'- -UGC-UCGUC-----CGGCg----CGCCCGCaaGCUG- -5'
24931 5' -61.9 NC_005284.1 + 8697 0.68 0.260223
Target:  5'- aGCGuGCAGGUCacgGUGCGcGCGcUCGACg -3'
miRNA:   3'- -UGCuCGUCCGG---CGCGCcCGCaAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.