miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24956 3' -56.3 NC_005284.1 + 42779 1.04 0.001395
Target:  5'- cACGCACAACAACCUCGCGCCGGCAUUc -3'
miRNA:   3'- -UGCGUGUUGUUGGAGCGCGGCCGUAA- -5'
24956 3' -56.3 NC_005284.1 + 34980 0.77 0.12882
Target:  5'- uAUGCACGACGAgCUCGCuGUCGGCGa- -3'
miRNA:   3'- -UGCGUGUUGUUgGAGCG-CGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 26444 0.76 0.156663
Target:  5'- uCGCGCGuguuguaGACCggCGCGCCGGCGUUg -3'
miRNA:   3'- uGCGUGUug-----UUGGa-GCGCGGCCGUAA- -5'
24956 3' -56.3 NC_005284.1 + 46866 0.75 0.184746
Target:  5'- uCGC-CAACcgaccgGACCUUGCGCCGGCGa- -3'
miRNA:   3'- uGCGuGUUG------UUGGAGCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 37528 0.73 0.254368
Target:  5'- cGCGC-CGACGAuguuCCUCGCGgCCGGCu-- -3'
miRNA:   3'- -UGCGuGUUGUU----GGAGCGC-GGCCGuaa -5'
24956 3' -56.3 NC_005284.1 + 21661 0.72 0.281961
Target:  5'- cGCGCACGAU-GCCgcCGCGUCGGCGg- -3'
miRNA:   3'- -UGCGUGUUGuUGGa-GCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 21235 0.72 0.281961
Target:  5'- gGCGCACAuauCAG-CUCGCGgCGGCGg- -3'
miRNA:   3'- -UGCGUGUu--GUUgGAGCGCgGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 27641 0.72 0.304177
Target:  5'- uGCGCgACGACAACCucgggcaaUCGCcgcuauacggGCCGGCGUg -3'
miRNA:   3'- -UGCG-UGUUGUUGG--------AGCG----------CGGCCGUAa -5'
24956 3' -56.3 NC_005284.1 + 29785 0.71 0.318929
Target:  5'- gACGC-CGGcCGACCUCGCGaucgucaCCGGCAa- -3'
miRNA:   3'- -UGCGuGUU-GUUGGAGCGC-------GGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 48977 0.71 0.31972
Target:  5'- gGCGCAgCGACAcCUUCGcCGCCgGGCGUg -3'
miRNA:   3'- -UGCGU-GUUGUuGGAGC-GCGG-CCGUAa -5'
24956 3' -56.3 NC_005284.1 + 14514 0.71 0.335852
Target:  5'- gACGCGCAGCAGCCaUCGCcgacgcugcggGUgGGCGa- -3'
miRNA:   3'- -UGCGUGUUGUUGG-AGCG-----------CGgCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 10941 0.71 0.335852
Target:  5'- cCGCAUGGCcGGCCUCGuCGCCGGaCGa- -3'
miRNA:   3'- uGCGUGUUG-UUGGAGC-GCGGCC-GUaa -5'
24956 3' -56.3 NC_005284.1 + 21802 0.71 0.352569
Target:  5'- cUGCACGGCAGCCggugGCGaCGGCGUg -3'
miRNA:   3'- uGCGUGUUGUUGGag--CGCgGCCGUAa -5'
24956 3' -56.3 NC_005284.1 + 12498 0.7 0.361147
Target:  5'- gGCGCGCuGACcgagaucccGCCguugCGCGCCGGCGa- -3'
miRNA:   3'- -UGCGUG-UUGu--------UGGa---GCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 9218 0.7 0.361147
Target:  5'- cGCGCGCGAUAGCaucCGCGacacCCGGCAa- -3'
miRNA:   3'- -UGCGUGUUGUUGga-GCGC----GGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 8659 0.7 0.361147
Target:  5'- gGCGCACAGCGgaugcggcguuuGCCUCGaaCGCCGcaaGCGUg -3'
miRNA:   3'- -UGCGUGUUGU------------UGGAGC--GCGGC---CGUAa -5'
24956 3' -56.3 NC_005284.1 + 26345 0.7 0.369868
Target:  5'- -aGCGCGGCAcggucaacGCCggCGCGCCGGUc-- -3'
miRNA:   3'- ugCGUGUUGU--------UGGa-GCGCGGCCGuaa -5'
24956 3' -56.3 NC_005284.1 + 10079 0.7 0.369868
Target:  5'- aACGCGCGGCGACCgcgacCGCGgCGGg--- -3'
miRNA:   3'- -UGCGUGUUGUUGGa----GCGCgGCCguaa -5'
24956 3' -56.3 NC_005284.1 + 32498 0.7 0.378732
Target:  5'- cUGCAaacuCGAUuGCCUCGCGCUGGCu-- -3'
miRNA:   3'- uGCGU----GUUGuUGGAGCGCGGCCGuaa -5'
24956 3' -56.3 NC_005284.1 + 21545 0.7 0.385021
Target:  5'- gGCGCACAuCGGCUUgccgacgagcaggcCGCGCgGGCGUUc -3'
miRNA:   3'- -UGCGUGUuGUUGGA--------------GCGCGgCCGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.