miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24956 3' -56.3 NC_005284.1 + 1073 0.67 0.568307
Target:  5'- cCGCGCcgGGCGaaagaccucccagGCCugcuuuucagucgUCGCGCCGGCGUa -3'
miRNA:   3'- uGCGUG--UUGU-------------UGG-------------AGCGCGGCCGUAa -5'
24956 3' -56.3 NC_005284.1 + 1208 0.68 0.495416
Target:  5'- gAUGCugAcCGGCaugggcgCGCGCCGGCAg- -3'
miRNA:   3'- -UGCGugUuGUUGga-----GCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 1284 0.67 0.527123
Target:  5'- cCGUGCuuCGACaa-GCGCCGGCAg- -3'
miRNA:   3'- uGCGUGuuGUUGgagCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 6121 0.67 0.536786
Target:  5'- gACGCccccgagACAACGuCCUCGCGaaaGGCGUa -3'
miRNA:   3'- -UGCG-------UGUUGUuGGAGCGCgg-CCGUAa -5'
24956 3' -56.3 NC_005284.1 + 7042 0.68 0.495416
Target:  5'- cGCGuCACGACGAaauaCg-GCGCCGGCGc- -3'
miRNA:   3'- -UGC-GUGUUGUUg---GagCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 8659 0.7 0.361147
Target:  5'- gGCGCACAGCGgaugcggcguuuGCCUCGaaCGCCGcaaGCGUg -3'
miRNA:   3'- -UGCGUGUUGU------------UGGAGC--GCGGC---CGUAa -5'
24956 3' -56.3 NC_005284.1 + 9218 0.7 0.361147
Target:  5'- cGCGCGCGAUAGCaucCGCGacacCCGGCAa- -3'
miRNA:   3'- -UGCGUGUUGUUGga-GCGC----GGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 9442 0.67 0.537863
Target:  5'- cUGCGCAA--GCCUCGCGCUcGCGc- -3'
miRNA:   3'- uGCGUGUUguUGGAGCGCGGcCGUaa -5'
24956 3' -56.3 NC_005284.1 + 9586 0.67 0.527123
Target:  5'- aGCGCAgGGCGAUCgcgcugcCGCGgCGGCGa- -3'
miRNA:   3'- -UGCGUgUUGUUGGa------GCGCgGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 9679 0.7 0.387738
Target:  5'- gAUGCGCGAaAGCCUUGCgaugcaGUCGGCAUUg -3'
miRNA:   3'- -UGCGUGUUgUUGGAGCG------CGGCCGUAA- -5'
24956 3' -56.3 NC_005284.1 + 9785 0.67 0.559559
Target:  5'- cACGuCGCAACGGCgCgcgccaaCGuCGCCGGCAg- -3'
miRNA:   3'- -UGC-GUGUUGUUG-Ga------GC-GCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 9885 0.68 0.495416
Target:  5'- cCGCACAGCAggaGCUcgagCGCGCCGaaGCGUc -3'
miRNA:   3'- uGCGUGUUGU---UGGa---GCGCGGC--CGUAa -5'
24956 3' -56.3 NC_005284.1 + 10011 0.66 0.581492
Target:  5'- gACGgACcGCGGCCUUGCgcaaGCCGaGCGUg -3'
miRNA:   3'- -UGCgUGuUGUUGGAGCG----CGGC-CGUAa -5'
24956 3' -56.3 NC_005284.1 + 10079 0.7 0.369868
Target:  5'- aACGCGCGGCGACCgcgacCGCGgCGGg--- -3'
miRNA:   3'- -UGCGUGUUGUUGGa----GCGCgGCCguaa -5'
24956 3' -56.3 NC_005284.1 + 10137 0.66 0.603596
Target:  5'- gGCGCA-GACGGCgCUCGCGCguacgGGCAc- -3'
miRNA:   3'- -UGCGUgUUGUUG-GAGCGCGg----CCGUaa -5'
24956 3' -56.3 NC_005284.1 + 10734 0.67 0.559559
Target:  5'- gGCGCGCAcCAGuuCCUCGCGCa-GCGc- -3'
miRNA:   3'- -UGCGUGUuGUU--GGAGCGCGgcCGUaa -5'
24956 3' -56.3 NC_005284.1 + 10789 0.69 0.425135
Target:  5'- gACGCG-AACAACUUCuuCGCCGGCGg- -3'
miRNA:   3'- -UGCGUgUUGUUGGAGc-GCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 10941 0.71 0.335852
Target:  5'- cCGCAUGGCcGGCCUCGuCGCCGGaCGa- -3'
miRNA:   3'- uGCGUGUUG-UUGGAGC-GCGGCC-GUaa -5'
24956 3' -56.3 NC_005284.1 + 11247 0.69 0.434816
Target:  5'- cGCGCGCGGCGGCCgcggcgcgagcUGCGUCaGCAUUg -3'
miRNA:   3'- -UGCGUGUUGUUGGa----------GCGCGGcCGUAA- -5'
24956 3' -56.3 NC_005284.1 + 11256 0.67 0.537863
Target:  5'- aACGCgGCAGCGG-CUCGCG-CGGCGa- -3'
miRNA:   3'- -UGCG-UGUUGUUgGAGCGCgGCCGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.