miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24956 3' -56.3 NC_005284.1 + 43106 0.68 0.464601
Target:  5'- cAUGCAUuacgAGCGACCUUGCGCgGuGCGg- -3'
miRNA:   3'- -UGCGUG----UUGUUGGAGCGCGgC-CGUaa -5'
24956 3' -56.3 NC_005284.1 + 21545 0.7 0.385021
Target:  5'- gGCGCACAuCGGCUUgccgacgagcaggcCGCGCgGGCGUUc -3'
miRNA:   3'- -UGCGUGUuGUUGGA--------------GCGCGgCCGUAA- -5'
24956 3' -56.3 NC_005284.1 + 9679 0.7 0.387738
Target:  5'- gAUGCGCGAaAGCCUUGCgaugcaGUCGGCAUUg -3'
miRNA:   3'- -UGCGUGUUgUUGGAGCG------CGGCCGUAA- -5'
24956 3' -56.3 NC_005284.1 + 48322 0.69 0.406166
Target:  5'- aGCGCuauccggaagGCGGCGGCgagaugauuCUCGCGCUGGCAc- -3'
miRNA:   3'- -UGCG----------UGUUGUUG---------GAGCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 49436 0.69 0.409917
Target:  5'- uCGCAucCGGCGACCUCGaccggccacucuucaCGCCGGUAa- -3'
miRNA:   3'- uGCGU--GUUGUUGGAGC---------------GCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 10789 0.69 0.425135
Target:  5'- gACGCG-AACAACUUCuuCGCCGGCGg- -3'
miRNA:   3'- -UGCGUgUUGUUGGAGc-GCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 16031 0.69 0.444623
Target:  5'- -gGCGCGACGAgauCCgcaUUGCGCCGGUAa- -3'
miRNA:   3'- ugCGUGUUGUU---GG---AGCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 35755 0.69 0.454553
Target:  5'- uCGCcguCGAugauCAGCUUCGUGCCGGCGg- -3'
miRNA:   3'- uGCGu--GUU----GUUGGAGCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 17941 0.68 0.464601
Target:  5'- gGCGC-CGACAAUCgC-CGCCGGCGa- -3'
miRNA:   3'- -UGCGuGUUGUUGGaGcGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 32498 0.7 0.378732
Target:  5'- cUGCAaacuCGAUuGCCUCGCGCUGGCu-- -3'
miRNA:   3'- uGCGU----GUUGuUGGAGCGCGGCCGuaa -5'
24956 3' -56.3 NC_005284.1 + 10079 0.7 0.369868
Target:  5'- aACGCGCGGCGACCgcgacCGCGgCGGg--- -3'
miRNA:   3'- -UGCGUGUUGUUGGa----GCGCgGCCguaa -5'
24956 3' -56.3 NC_005284.1 + 26345 0.7 0.369868
Target:  5'- -aGCGCGGCAcggucaacGCCggCGCGCCGGUc-- -3'
miRNA:   3'- ugCGUGUUGU--------UGGa-GCGCGGCCGuaa -5'
24956 3' -56.3 NC_005284.1 + 46866 0.75 0.184746
Target:  5'- uCGC-CAACcgaccgGACCUUGCGCCGGCGa- -3'
miRNA:   3'- uGCGuGUUG------UUGGAGCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 21235 0.72 0.281961
Target:  5'- gGCGCACAuauCAG-CUCGCGgCGGCGg- -3'
miRNA:   3'- -UGCGUGUu--GUUgGAGCGCgGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 21661 0.72 0.281961
Target:  5'- cGCGCACGAU-GCCgcCGCGUCGGCGg- -3'
miRNA:   3'- -UGCGUGUUGuUGGa-GCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 27641 0.72 0.304177
Target:  5'- uGCGCgACGACAACCucgggcaaUCGCcgcuauacggGCCGGCGUg -3'
miRNA:   3'- -UGCG-UGUUGUUGG--------AGCG----------CGGCCGUAa -5'
24956 3' -56.3 NC_005284.1 + 14514 0.71 0.335852
Target:  5'- gACGCGCAGCAGCCaUCGCcgacgcugcggGUgGGCGa- -3'
miRNA:   3'- -UGCGUGUUGUUGG-AGCG-----------CGgCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 10941 0.71 0.335852
Target:  5'- cCGCAUGGCcGGCCUCGuCGCCGGaCGa- -3'
miRNA:   3'- uGCGUGUUG-UUGGAGC-GCGGCC-GUaa -5'
24956 3' -56.3 NC_005284.1 + 21802 0.71 0.352569
Target:  5'- cUGCACGGCAGCCggugGCGaCGGCGUg -3'
miRNA:   3'- uGCGUGUUGUUGGag--CGCgGCCGUAa -5'
24956 3' -56.3 NC_005284.1 + 8659 0.7 0.361147
Target:  5'- gGCGCACAGCGgaugcggcguuuGCCUCGaaCGCCGcaaGCGUg -3'
miRNA:   3'- -UGCGUGUUGU------------UGGAGC--GCGGC---CGUAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.