miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24957 5' -52.8 NC_005284.1 + 45591 1.13 0.00097
Target:  5'- uCGACGCCUGAUCACAUACACGCUGCCg -3'
miRNA:   3'- -GCUGCGGACUAGUGUAUGUGCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 7620 0.75 0.359705
Target:  5'- uCGGCGCCUGAU---GUACGCGCcgGUCg -3'
miRNA:   3'- -GCUGCGGACUAgugUAUGUGCGa-CGG- -5'
24957 5' -52.8 NC_005284.1 + 18913 0.75 0.37732
Target:  5'- uCGGCGCUUGG-CACGgagcUGCGCGC-GCCg -3'
miRNA:   3'- -GCUGCGGACUaGUGU----AUGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 10297 0.73 0.443361
Target:  5'- gCGACGUcgaguCUGAUCgACAUGCAgGC-GCCg -3'
miRNA:   3'- -GCUGCG-----GACUAG-UGUAUGUgCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 8869 0.73 0.463396
Target:  5'- aGGCGCCUGAUCAaugGCuucCGCUuCCa -3'
miRNA:   3'- gCUGCGGACUAGUguaUGu--GCGAcGG- -5'
24957 5' -52.8 NC_005284.1 + 23521 0.73 0.463396
Target:  5'- --cCGCCUGAUCGCcgACACGCcaaaCCu -3'
miRNA:   3'- gcuGCGGACUAGUGuaUGUGCGac--GG- -5'
24957 5' -52.8 NC_005284.1 + 44482 0.73 0.47359
Target:  5'- gCGGCGCCUGcauGUCgaucagacucgACGU-CGCGCUGCUc -3'
miRNA:   3'- -GCUGCGGAC---UAG-----------UGUAuGUGCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 10244 0.72 0.483896
Target:  5'- uGGCGCUUGGggcugcCGCGaACugGCUGCUg -3'
miRNA:   3'- gCUGCGGACUa-----GUGUaUGugCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 7020 0.72 0.494307
Target:  5'- gCGcCGCCUcGAUCugcuuacgcggACGUACGCGCgccGCCg -3'
miRNA:   3'- -GCuGCGGA-CUAG-----------UGUAUGUGCGa--CGG- -5'
24957 5' -52.8 NC_005284.1 + 35802 0.71 0.558683
Target:  5'- gCGGCGCUUGAagC-CGUGCAUGggGCCg -3'
miRNA:   3'- -GCUGCGGACUa-GuGUAUGUGCgaCGG- -5'
24957 5' -52.8 NC_005284.1 + 22707 0.71 0.569667
Target:  5'- cCGugGCUUGA-CAUgaACACGCUcaaGCCg -3'
miRNA:   3'- -GCugCGGACUaGUGuaUGUGCGA---CGG- -5'
24957 5' -52.8 NC_005284.1 + 258 0.71 0.580702
Target:  5'- aGAgGCCgcuGUCGCGgcgcaagAUGCGCUGCCu -3'
miRNA:   3'- gCUgCGGac-UAGUGUa------UGUGCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 31368 0.71 0.591783
Target:  5'- gGugGCCgugGAUUGCAUagaACGCGCcGUCg -3'
miRNA:   3'- gCugCGGa--CUAGUGUA---UGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 47089 0.7 0.625195
Target:  5'- uCGGCGCaCcGcUCACGcGCACGCUGUa -3'
miRNA:   3'- -GCUGCG-GaCuAGUGUaUGUGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 21636 0.7 0.625195
Target:  5'- uCGACGCCgagcagcgugcGAUCGCcgcGCACGaUGCCg -3'
miRNA:   3'- -GCUGCGGa----------CUAGUGua-UGUGCgACGG- -5'
24957 5' -52.8 NC_005284.1 + 4616 0.7 0.636358
Target:  5'- uGGCGCC-GAUCGCGUugcGCaACGaCUGCg -3'
miRNA:   3'- gCUGCGGaCUAGUGUA---UG-UGC-GACGg -5'
24957 5' -52.8 NC_005284.1 + 48238 0.69 0.669782
Target:  5'- uGGCGCaaagaCUGA-CGCugacgGCGCGUUGCCg -3'
miRNA:   3'- gCUGCG-----GACUaGUGua---UGUGCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 1957 0.69 0.680865
Target:  5'- uGACGCC-GGUCACGaucgugcagaacUACACGaacaUGUCg -3'
miRNA:   3'- gCUGCGGaCUAGUGU------------AUGUGCg---ACGG- -5'
24957 5' -52.8 NC_005284.1 + 18264 0.69 0.6919
Target:  5'- uGAUGCCaag-CAguCAUGCaACGCUGCCu -3'
miRNA:   3'- gCUGCGGacuaGU--GUAUG-UGCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 38973 0.69 0.6919
Target:  5'- gCGAUG-CUGAUcCGCGggcUGCGCGCUGgCg -3'
miRNA:   3'- -GCUGCgGACUA-GUGU---AUGUGCGACgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.