miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24957 5' -52.8 NC_005284.1 + 28531 0.66 0.843709
Target:  5'- -aGCGCCU--UCACGUcauacccgGCACGUUcGCCa -3'
miRNA:   3'- gcUGCGGAcuAGUGUA--------UGUGCGA-CGG- -5'
24957 5' -52.8 NC_005284.1 + 39001 0.68 0.724604
Target:  5'- nCGACGCaa---CGCAUGCGCGaguUGCCa -3'
miRNA:   3'- -GCUGCGgacuaGUGUAUGUGCg--ACGG- -5'
24957 5' -52.8 NC_005284.1 + 9773 0.68 0.75541
Target:  5'- aCGGCGCaaGcUCACGUcgcaacgGCGCGC-GCCa -3'
miRNA:   3'- -GCUGCGgaCuAGUGUA-------UGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 19010 0.68 0.756455
Target:  5'- uGGCGUgUGGUCGC-UGCAgGCggcgaucGCCg -3'
miRNA:   3'- gCUGCGgACUAGUGuAUGUgCGa------CGG- -5'
24957 5' -52.8 NC_005284.1 + 18053 0.67 0.766826
Target:  5'- uCGACGCC-GAUC-CGgugGCggGCGCUGUg -3'
miRNA:   3'- -GCUGCGGaCUAGuGUa--UG--UGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 17488 0.67 0.796056
Target:  5'- gGGCGCCgggucggUGGUCGCGUcgGC-CGauaUGCCg -3'
miRNA:   3'- gCUGCGG-------ACUAGUGUA--UGuGCg--ACGG- -5'
24957 5' -52.8 NC_005284.1 + 14615 0.67 0.797039
Target:  5'- cCGGCGCC-GAaCGCucGCGCGCUaccucgacGCCg -3'
miRNA:   3'- -GCUGCGGaCUaGUGuaUGUGCGA--------CGG- -5'
24957 5' -52.8 NC_005284.1 + 17304 0.67 0.816314
Target:  5'- uCGAUGCUucgaUGGUCGauaaGUGgGCGCUGUa -3'
miRNA:   3'- -GCUGCGG----ACUAGUg---UAUgUGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 25890 0.67 0.816314
Target:  5'- cCGAUGCCU--UCGCAaaacuguucuUugAUGCUGCg -3'
miRNA:   3'- -GCUGCGGAcuAGUGU----------AugUGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 40742 0.68 0.724604
Target:  5'- aGuACG-CUGAUCGgGUGCAUGCgauuuugGCCg -3'
miRNA:   3'- gC-UGCgGACUAGUgUAUGUGCGa------CGG- -5'
24957 5' -52.8 NC_005284.1 + 53725 0.68 0.713781
Target:  5'- aGcACGUCgGuagUACcgACGCGCUGCCg -3'
miRNA:   3'- gC-UGCGGaCua-GUGuaUGUGCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 38973 0.69 0.6919
Target:  5'- gCGAUG-CUGAUcCGCGggcUGCGCGCUGgCg -3'
miRNA:   3'- -GCUGCgGACUA-GUGU---AUGUGCGACgG- -5'
24957 5' -52.8 NC_005284.1 + 18913 0.75 0.37732
Target:  5'- uCGGCGCUUGG-CACGgagcUGCGCGC-GCCg -3'
miRNA:   3'- -GCUGCGGACUaGUGU----AUGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 10297 0.73 0.443361
Target:  5'- gCGACGUcgaguCUGAUCgACAUGCAgGC-GCCg -3'
miRNA:   3'- -GCUGCG-----GACUAG-UGUAUGUgCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 10244 0.72 0.483896
Target:  5'- uGGCGCUUGGggcugcCGCGaACugGCUGCUg -3'
miRNA:   3'- gCUGCGGACUa-----GUGUaUGugCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 35802 0.71 0.558683
Target:  5'- gCGGCGCUUGAagC-CGUGCAUGggGCCg -3'
miRNA:   3'- -GCUGCGGACUa-GuGUAUGUGCgaCGG- -5'
24957 5' -52.8 NC_005284.1 + 31368 0.71 0.591783
Target:  5'- gGugGCCgugGAUUGCAUagaACGCGCcGUCg -3'
miRNA:   3'- gCugCGGa--CUAGUGUA---UGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 21636 0.7 0.625195
Target:  5'- uCGACGCCgagcagcgugcGAUCGCcgcGCACGaUGCCg -3'
miRNA:   3'- -GCUGCGGa----------CUAGUGua-UGUGCgACGG- -5'
24957 5' -52.8 NC_005284.1 + 48238 0.69 0.669782
Target:  5'- uGGCGCaaagaCUGA-CGCugacgGCGCGUUGCCg -3'
miRNA:   3'- gCUGCG-----GACUaGUGua---UGUGCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 1957 0.69 0.680865
Target:  5'- uGACGCC-GGUCACGaucgugcagaacUACACGaacaUGUCg -3'
miRNA:   3'- gCUGCGGaCUAGUGU------------AUGUGCg---ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.