miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24957 5' -52.8 NC_005284.1 + 258 0.71 0.580702
Target:  5'- aGAgGCCgcuGUCGCGgcgcaagAUGCGCUGCCu -3'
miRNA:   3'- gCUgCGGac-UAGUGUa------UGUGCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 1957 0.69 0.680865
Target:  5'- uGACGCC-GGUCACGaucgugcagaacUACACGaacaUGUCg -3'
miRNA:   3'- gCUGCGGaCUAGUGU------------AUGUGCg---ACGG- -5'
24957 5' -52.8 NC_005284.1 + 3055 0.66 0.860846
Target:  5'- -cGCGCCgcGAUCuuucCGUACACGC-GCUu -3'
miRNA:   3'- gcUGCGGa-CUAGu---GUAUGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 4549 0.67 0.797039
Target:  5'- gCGuCGCCgu-UCGCGU-CAgGCUGCUg -3'
miRNA:   3'- -GCuGCGGacuAGUGUAuGUgCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 4616 0.7 0.636358
Target:  5'- uGGCGCC-GAUCGCGUugcGCaACGaCUGCg -3'
miRNA:   3'- gCUGCGGaCUAGUGUA---UG-UGC-GACGg -5'
24957 5' -52.8 NC_005284.1 + 6568 0.69 0.702876
Target:  5'- -uGCGCCacaUGAcagaCACGUACGCGUgGCCg -3'
miRNA:   3'- gcUGCGG---ACUa---GUGUAUGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 7020 0.72 0.494307
Target:  5'- gCGcCGCCUcGAUCugcuuacgcggACGUACGCGCgccGCCg -3'
miRNA:   3'- -GCuGCGGA-CUAG-----------UGUAUGUGCGa--CGG- -5'
24957 5' -52.8 NC_005284.1 + 7620 0.75 0.359705
Target:  5'- uCGGCGCCUGAU---GUACGCGCcgGUCg -3'
miRNA:   3'- -GCUGCGGACUAgugUAUGUGCGa-CGG- -5'
24957 5' -52.8 NC_005284.1 + 8869 0.73 0.463396
Target:  5'- aGGCGCCUGAUCAaugGCuucCGCUuCCa -3'
miRNA:   3'- gCUGCGGACUAGUguaUGu--GCGAcGG- -5'
24957 5' -52.8 NC_005284.1 + 9700 0.68 0.735331
Target:  5'- aCGGCGCUcGGcaacuUCACGaGCGCGUaGCCg -3'
miRNA:   3'- -GCUGCGGaCU-----AGUGUaUGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 9773 0.68 0.75541
Target:  5'- aCGGCGCaaGcUCACGUcgcaacgGCGCGC-GCCa -3'
miRNA:   3'- -GCUGCGgaCuAGUGUA-------UGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 10244 0.72 0.483896
Target:  5'- uGGCGCUUGGggcugcCGCGaACugGCUGCUg -3'
miRNA:   3'- gCUGCGGACUa-----GUGUaUGugCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 10297 0.73 0.443361
Target:  5'- gCGACGUcgaguCUGAUCgACAUGCAgGC-GCCg -3'
miRNA:   3'- -GCUGCG-----GACUAG-UGUAUGUgCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 11395 0.68 0.745952
Target:  5'- -cGCGCCUcGAcagCGCGggacuugACGCGCUGCg -3'
miRNA:   3'- gcUGCGGA-CUa--GUGUa------UGUGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 14601 0.68 0.735331
Target:  5'- gGACGCCggaguUGGUCGCGacGCACGUgGCg -3'
miRNA:   3'- gCUGCGG-----ACUAGUGUa-UGUGCGaCGg -5'
24957 5' -52.8 NC_005284.1 + 14615 0.67 0.797039
Target:  5'- cCGGCGCC-GAaCGCucGCGCGCUaccucgacGCCg -3'
miRNA:   3'- -GCUGCGGaCUaGUGuaUGUGCGA--------CGG- -5'
24957 5' -52.8 NC_005284.1 + 15443 0.66 0.852396
Target:  5'- aGACGCgCUGccaaGCAUGCGagcgUGCUGCg -3'
miRNA:   3'- gCUGCG-GACuag-UGUAUGU----GCGACGg -5'
24957 5' -52.8 NC_005284.1 + 16003 0.67 0.815369
Target:  5'- uCGAgCGCCaUGAUCGCAacUACuuCGCcggacauUGCCu -3'
miRNA:   3'- -GCU-GCGG-ACUAGUGU--AUGu-GCG-------ACGG- -5'
24957 5' -52.8 NC_005284.1 + 17304 0.67 0.816314
Target:  5'- uCGAUGCUucgaUGGUCGauaaGUGgGCGCUGUa -3'
miRNA:   3'- -GCUGCGG----ACUAGUg---UAUgUGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 17488 0.67 0.796056
Target:  5'- gGGCGCCgggucggUGGUCGCGUcgGC-CGauaUGCCg -3'
miRNA:   3'- gCUGCGG-------ACUAGUGUA--UGuGCg--ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.