Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24958 | 3' | -55.5 | NC_005284.1 | + | 49002 | 0.66 | 0.739418 |
Target: 5'- uCGAGCGAAaCGAUCGgCGUUugGUCGGc -3' miRNA: 3'- -GCUUGCUUgGCUAGCgGCAG--CGGCUu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 30429 | 0.66 | 0.707806 |
Target: 5'- gCGAcgGCGAgguGCUGuuUCGCgaGUCGCCGAu -3' miRNA: 3'- -GCU--UGCU---UGGCu-AGCGg-CAGCGGCUu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 11698 | 0.66 | 0.707806 |
Target: 5'- uGAGCGA--CGAguuUCGCCGUCGaCGGGa -3' miRNA: 3'- gCUUGCUugGCU---AGCGGCAGCgGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 12467 | 0.66 | 0.738378 |
Target: 5'- uCGAaccccGCGAGCCuGAUCGCgGUUGgggaguuCCGAAa -3' miRNA: 3'- -GCU-----UGCUUGG-CUAGCGgCAGC-------GGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 13774 | 0.66 | 0.694961 |
Target: 5'- uGAACGuccuccgcgaCGAUCGCCGUuccagcaaUGCCGGGg -3' miRNA: 3'- gCUUGCuug-------GCUAGCGGCA--------GCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 17922 | 0.66 | 0.718431 |
Target: 5'- aGAACGAACUGcgUGCa---GCCGAGg -3' miRNA: 3'- gCUUGCUUGGCuaGCGgcagCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 53977 | 0.66 | 0.707806 |
Target: 5'- uGAGCcAGCCGAacgUCGCCaUCagGCCGAAc -3' miRNA: 3'- gCUUGcUUGGCU---AGCGGcAG--CGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 42713 | 0.66 | 0.707806 |
Target: 5'- cCGAuCGcuCCGAacaccugagacaUCGCCGcacgCGCCGAAa -3' miRNA: 3'- -GCUuGCuuGGCU------------AGCGGCa---GCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 7041 | 0.66 | 0.718431 |
Target: 5'- gCGGACGuACgCGcgcCGCCGUacCGCCGAGc -3' miRNA: 3'- -GCUUGCuUG-GCua-GCGGCA--GCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 28687 | 0.66 | 0.728972 |
Target: 5'- uGGGCuuGCCGAUgGCUGUCaGCCa-- -3' miRNA: 3'- gCUUGcuUGGCUAgCGGCAG-CGGcuu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 16101 | 0.66 | 0.718431 |
Target: 5'- aCGuccauCGAGCCuuUCGCCG-CGUCGAc -3' miRNA: 3'- -GCuu---GCUUGGcuAGCGGCaGCGGCUu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 21608 | 0.66 | 0.728972 |
Target: 5'- -aAGgGAACCGAUCGaCGUCG-CGAGg -3' miRNA: 3'- gcUUgCUUGGCUAGCgGCAGCgGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 42265 | 0.67 | 0.675538 |
Target: 5'- uGGGCGAgugugcGCCGGUCGUCGagGUCGu- -3' miRNA: 3'- gCUUGCU------UGGCUAGCGGCagCGGCuu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 52613 | 0.67 | 0.675538 |
Target: 5'- aGAgcGCGGGCUGAauUUGCCGcCGCaCGGAu -3' miRNA: 3'- gCU--UGCUUGGCU--AGCGGCaGCG-GCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 50289 | 0.67 | 0.664687 |
Target: 5'- gCGGAUcAAgCGGcCGaCCGUCGCCGAGg -3' miRNA: 3'- -GCUUGcUUgGCUaGC-GGCAGCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 53841 | 0.67 | 0.653806 |
Target: 5'- uCGAACGGGgUGAUCGCC--CGCCa-- -3' miRNA: 3'- -GCUUGCUUgGCUAGCGGcaGCGGcuu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 30805 | 0.67 | 0.653806 |
Target: 5'- cCGGAuCGucCCGAUCGCgGUCGUaggCGAGa -3' miRNA: 3'- -GCUU-GCuuGGCUAGCGgCAGCG---GCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 35527 | 0.67 | 0.653806 |
Target: 5'- aGAGCGAuucCCGuGUCGCgGUCgcgaggucgaGCCGAAg -3' miRNA: 3'- gCUUGCUu--GGC-UAGCGgCAG----------CGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 49356 | 0.67 | 0.631996 |
Target: 5'- cCGAACu-AUCGGUCGCagcuUCGCCGAGc -3' miRNA: 3'- -GCUUGcuUGGCUAGCGgc--AGCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 32961 | 0.67 | 0.664687 |
Target: 5'- -cGGCGGcgcuggaagcGCCGGgcaCGCCGUCGCCa-- -3' miRNA: 3'- gcUUGCU----------UGGCUa--GCGGCAGCGGcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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