Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24958 | 3' | -55.5 | NC_005284.1 | + | 5347 | 0.69 | 0.566856 |
Target: 5'- aGAGUG-GCCGGUCGagGUCGCCGGAu -3' miRNA: 3'- gCUUGCuUGGCUAGCggCAGCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 7041 | 0.66 | 0.718431 |
Target: 5'- gCGGACGuACgCGcgcCGCCGUacCGCCGAGc -3' miRNA: 3'- -GCUUGCuUG-GCua-GCGGCA--GCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 7709 | 0.7 | 0.48312 |
Target: 5'- uGAGCGGugcGCCGAagcucgUGCCGcCGCCGGc -3' miRNA: 3'- gCUUGCU---UGGCUa-----GCGGCaGCGGCUu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 10961 | 0.7 | 0.463095 |
Target: 5'- cCGGACGAGCgGA-CGCaucaaGUCGCuCGAAa -3' miRNA: 3'- -GCUUGCUUGgCUaGCGg----CAGCG-GCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 11698 | 0.66 | 0.707806 |
Target: 5'- uGAGCGA--CGAguuUCGCCGUCGaCGGGa -3' miRNA: 3'- gCUUGCUugGCU---AGCGGCAGCgGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 12467 | 0.66 | 0.738378 |
Target: 5'- uCGAaccccGCGAGCCuGAUCGCgGUUGgggaguuCCGAAa -3' miRNA: 3'- -GCU-----UGCUUGG-CUAGCGgCAGC-------GGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 13298 | 0.71 | 0.433899 |
Target: 5'- uCGGACGGugUGAagaacUgGCaCGUCGCCGAGc -3' miRNA: 3'- -GCUUGCUugGCU-----AgCG-GCAGCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 13774 | 0.66 | 0.694961 |
Target: 5'- uGAACGuccuccgcgaCGAUCGCCGUuccagcaaUGCCGGGg -3' miRNA: 3'- gCUUGCuug-------GCUAGCGGCA--------GCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 16101 | 0.66 | 0.718431 |
Target: 5'- aCGuccauCGAGCCuuUCGCCG-CGUCGAc -3' miRNA: 3'- -GCuu---GCUUGGcuAGCGGCaGCGGCUu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 16301 | 0.71 | 0.443514 |
Target: 5'- aGGGCGAGCCGGU-GCCGcUCGUCa-- -3' miRNA: 3'- gCUUGCUUGGCUAgCGGC-AGCGGcuu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 17845 | 0.75 | 0.249954 |
Target: 5'- gGGAC-AGgUGAUCGCCGUUGCCGAc -3' miRNA: 3'- gCUUGcUUgGCUAGCGGCAGCGGCUu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 17922 | 0.66 | 0.718431 |
Target: 5'- aGAACGAACUGcgUGCa---GCCGAGg -3' miRNA: 3'- gCUUGCUUGGCuaGCGgcagCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 18660 | 0.68 | 0.599303 |
Target: 5'- gCGAACGGAgauCUGGUacaGCCGcaCGCCGAAu -3' miRNA: 3'- -GCUUGCUU---GGCUAg--CGGCa-GCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 21197 | 0.69 | 0.534875 |
Target: 5'- cCGAuuGCGGAUCGGcuUCGCUGgugggUGCCGAAg -3' miRNA: 3'- -GCU--UGCUUGGCU--AGCGGCa----GCGGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 21608 | 0.66 | 0.728972 |
Target: 5'- -aAGgGAACCGAUCGaCGUCG-CGAGg -3' miRNA: 3'- gcUUgCUUGGCUAGCgGCAGCgGCUU- -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 21642 | 0.69 | 0.534875 |
Target: 5'- cCGAGCagcGugCGAUCGCCG-CGCaCGAu -3' miRNA: 3'- -GCUUGc--UugGCUAGCGGCaGCG-GCUu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 25515 | 0.68 | 0.621086 |
Target: 5'- cCGGugGAAUCGGagCgGCCGUCGUCGu- -3' miRNA: 3'- -GCUugCUUGGCUa-G-CGGCAGCGGCuu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 26876 | 0.75 | 0.25642 |
Target: 5'- -uGACG-ACCGAUCGCuuuuCGUCGCCGGg -3' miRNA: 3'- gcUUGCuUGGCUAGCG----GCAGCGGCUu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 28687 | 0.66 | 0.728972 |
Target: 5'- uGGGCuuGCCGAUgGCUGUCaGCCa-- -3' miRNA: 3'- gCUUGcuUGGCUAgCGGCAG-CGGcuu -5' |
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24958 | 3' | -55.5 | NC_005284.1 | + | 30429 | 0.66 | 0.707806 |
Target: 5'- gCGAcgGCGAgguGCUGuuUCGCgaGUCGCCGAu -3' miRNA: 3'- -GCU--UGCU---UGGCu-AGCGg-CAGCGGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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