miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24958 3' -55.5 NC_005284.1 + 46436 1.06 0.001749
Target:  5'- gCGAACGAACCGAUCGCCGUCGCCGAAu -3'
miRNA:   3'- -GCUUGCUUGGCUAGCGGCAGCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 36768 0.82 0.086484
Target:  5'- gCGAGCGuGACCGuGUCGCCGUCGaCCGAc -3'
miRNA:   3'- -GCUUGC-UUGGC-UAGCGGCAGC-GGCUu -5'
24958 3' -55.5 NC_005284.1 + 17845 0.75 0.249954
Target:  5'- gGGAC-AGgUGAUCGCCGUUGCCGAc -3'
miRNA:   3'- gCUUGcUUgGCUAGCGGCAGCGGCUu -5'
24958 3' -55.5 NC_005284.1 + 26876 0.75 0.25642
Target:  5'- -uGACG-ACCGAUCGCuuuuCGUCGCCGGg -3'
miRNA:   3'- gcUUGCuUGGCUAGCG----GCAGCGGCUu -5'
24958 3' -55.5 NC_005284.1 + 44654 0.75 0.25642
Target:  5'- aCGcGCGAgcGCCGucugCGCCGUCGCCGc- -3'
miRNA:   3'- -GCuUGCU--UGGCua--GCGGCAGCGGCuu -5'
24958 3' -55.5 NC_005284.1 + 49664 0.74 0.298118
Target:  5'- uCGAGCGAG-CGGUCGaguaCGUUGCCGAc -3'
miRNA:   3'- -GCUUGCUUgGCUAGCg---GCAGCGGCUu -5'
24958 3' -55.5 NC_005284.1 + 49659 0.73 0.328729
Target:  5'- aGGACGAucCCGGUCGCCGgaaauUCGgCGAGa -3'
miRNA:   3'- gCUUGCUu-GGCUAGCGGC-----AGCgGCUU- -5'
24958 3' -55.5 NC_005284.1 + 46065 0.72 0.378874
Target:  5'- gCGGAuCGAACUGcgCGCCG-CGUCGAGc -3'
miRNA:   3'- -GCUU-GCUUGGCuaGCGGCaGCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 36555 0.71 0.405801
Target:  5'- gGAACGAucgUGAUCgGCCGUUGCUGAAu -3'
miRNA:   3'- gCUUGCUug-GCUAG-CGGCAGCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 13298 0.71 0.433899
Target:  5'- uCGGACGGugUGAagaacUgGCaCGUCGCCGAGc -3'
miRNA:   3'- -GCUUGCUugGCU-----AgCG-GCAGCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 16301 0.71 0.443514
Target:  5'- aGGGCGAGCCGGU-GCCGcUCGUCa-- -3'
miRNA:   3'- gCUUGCUUGGCUAgCGGC-AGCGGcuu -5'
24958 3' -55.5 NC_005284.1 + 46816 0.7 0.462105
Target:  5'- gCGAacuucucGCGAACCGccguuUCGUCGUCGCCc-- -3'
miRNA:   3'- -GCU-------UGCUUGGCu----AGCGGCAGCGGcuu -5'
24958 3' -55.5 NC_005284.1 + 47264 0.7 0.463095
Target:  5'- aCGGGCGAgaACCucguGAUCgacgGCCGUCGCCGc- -3'
miRNA:   3'- -GCUUGCU--UGG----CUAG----CGGCAGCGGCuu -5'
24958 3' -55.5 NC_005284.1 + 10961 0.7 0.463095
Target:  5'- cCGGACGAGCgGA-CGCaucaaGUCGCuCGAAa -3'
miRNA:   3'- -GCUUGCUUGgCUaGCGg----CAGCG-GCUU- -5'
24958 3' -55.5 NC_005284.1 + 7709 0.7 0.48312
Target:  5'- uGAGCGGugcGCCGAagcucgUGCCGcCGCCGGc -3'
miRNA:   3'- gCUUGCU---UGGCUa-----GCGGCaGCGGCUu -5'
24958 3' -55.5 NC_005284.1 + 38835 0.7 0.493288
Target:  5'- gCGAACGugagGCCGG-CGUCGcgCGCCGAc -3'
miRNA:   3'- -GCUUGCu---UGGCUaGCGGCa-GCGGCUu -5'
24958 3' -55.5 NC_005284.1 + 37709 0.69 0.524353
Target:  5'- uCGAACGucauACCGAcaagCGCCGUCaUCGGAu -3'
miRNA:   3'- -GCUUGCu---UGGCUa---GCGGCAGcGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 21197 0.69 0.534875
Target:  5'- cCGAuuGCGGAUCGGcuUCGCUGgugggUGCCGAAg -3'
miRNA:   3'- -GCU--UGCUUGGCU--AGCGGCa----GCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 45275 0.69 0.534875
Target:  5'- aCGAGCGcucGCCGggCGCCGacccacgcugUCGCCGc- -3'
miRNA:   3'- -GCUUGCu--UGGCuaGCGGC----------AGCGGCuu -5'
24958 3' -55.5 NC_005284.1 + 46889 0.69 0.534875
Target:  5'- aGAAC-AugCGGUCGCCGaCGUCGGc -3'
miRNA:   3'- gCUUGcUugGCUAGCGGCaGCGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.