miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24960 5' -55.3 NC_005284.1 + 25072 0.66 0.724933
Target:  5'- ---aCGCCugaugacGCCGGCCG-ACCUcGCGa -3'
miRNA:   3'- aauaGCGGu------UGGCUGGCcUGGAaCGC- -5'
24960 5' -55.3 NC_005284.1 + 31010 0.66 0.724933
Target:  5'- ---cCGCCGugCGugCGGAagUUGCc -3'
miRNA:   3'- aauaGCGGUugGCugGCCUggAACGc -5'
24960 5' -55.3 NC_005284.1 + 20835 0.66 0.714206
Target:  5'- ---gCGCCGGCCGACgagCGGGCg--GCGc -3'
miRNA:   3'- aauaGCGGUUGGCUG---GCCUGgaaCGC- -5'
24960 5' -55.3 NC_005284.1 + 787 0.66 0.703398
Target:  5'- uUUAUCGagcaggaCGGCC-ACCGGGCCUuUGCc -3'
miRNA:   3'- -AAUAGCg------GUUGGcUGGCCUGGA-ACGc -5'
24960 5' -55.3 NC_005284.1 + 11309 0.66 0.681582
Target:  5'- ---gCGCgacagUAGCCGGUCGGAUCUUGCGc -3'
miRNA:   3'- aauaGCG-----GUUGGCUGGCCUGGAACGC- -5'
24960 5' -55.3 NC_005284.1 + 18769 0.66 0.681582
Target:  5'- -aAUCGCCAguACCGcCCGuGCUcgUGCGa -3'
miRNA:   3'- aaUAGCGGU--UGGCuGGCcUGGa-ACGC- -5'
24960 5' -55.3 NC_005284.1 + 7956 0.66 0.670597
Target:  5'- ----gGCCAucgaucAUCGAUCGGACCggGCGc -3'
miRNA:   3'- aauagCGGU------UGGCUGGCCUGGaaCGC- -5'
24960 5' -55.3 NC_005284.1 + 37292 0.66 0.670597
Target:  5'- aUAUCgGCCGACgCGACCaccGACCcgGCGc -3'
miRNA:   3'- aAUAG-CGGUUG-GCUGGc--CUGGaaCGC- -5'
24960 5' -55.3 NC_005284.1 + 9638 0.66 0.670597
Target:  5'- -cGUCGCCGugcgUCGACCacGCCUUGCc -3'
miRNA:   3'- aaUAGCGGUu---GGCUGGccUGGAACGc -5'
24960 5' -55.3 NC_005284.1 + 23948 0.67 0.659575
Target:  5'- -gGUCGUCGACCG---GGGCUUUGCa -3'
miRNA:   3'- aaUAGCGGUUGGCuggCCUGGAACGc -5'
24960 5' -55.3 NC_005284.1 + 12547 0.67 0.637466
Target:  5'- ---aCGCCGGCaGGgCGGAaCCUUGUGg -3'
miRNA:   3'- aauaGCGGUUGgCUgGCCU-GGAACGC- -5'
24960 5' -55.3 NC_005284.1 + 46351 0.67 0.626398
Target:  5'- -cGUCGCgGGCUcGCCGGACCaucucgGCa -3'
miRNA:   3'- aaUAGCGgUUGGcUGGCCUGGaa----CGc -5'
24960 5' -55.3 NC_005284.1 + 47449 0.67 0.604288
Target:  5'- --cUCGCCGAUCaACCGGGCCgagaagaugGCu -3'
miRNA:   3'- aauAGCGGUUGGcUGGCCUGGaa-------CGc -5'
24960 5' -55.3 NC_005284.1 + 30670 0.68 0.593265
Target:  5'- -cGUCGagCAGCCGGCCGGcggcuuUCUUGCc -3'
miRNA:   3'- aaUAGCg-GUUGGCUGGCCu-----GGAACGc -5'
24960 5' -55.3 NC_005284.1 + 17878 0.68 0.582275
Target:  5'- ----gGCCGGCCG-CCGGAUCg-GCGg -3'
miRNA:   3'- aauagCGGUUGGCuGGCCUGGaaCGC- -5'
24960 5' -55.3 NC_005284.1 + 54120 0.68 0.582275
Target:  5'- -aAUCGCCAACuCGgaGCCGGuaGCCggGCu -3'
miRNA:   3'- aaUAGCGGUUG-GC--UGGCC--UGGaaCGc -5'
24960 5' -55.3 NC_005284.1 + 2322 0.68 0.578985
Target:  5'- --uUCGCUGACCGACgGGAgCUUcugguccgcgugggGCGg -3'
miRNA:   3'- aauAGCGGUUGGCUGgCCUgGAA--------------CGC- -5'
24960 5' -55.3 NC_005284.1 + 9372 0.68 0.549589
Target:  5'- aUAUCGUC-GCCGGCCGcGACU--GCGa -3'
miRNA:   3'- aAUAGCGGuUGGCUGGC-CUGGaaCGC- -5'
24960 5' -55.3 NC_005284.1 + 6488 0.69 0.528114
Target:  5'- --cUCGCCGACCugcGugCGGAUuucgagaagCUUGCGa -3'
miRNA:   3'- aauAGCGGUUGG---CugGCCUG---------GAACGC- -5'
24960 5' -55.3 NC_005284.1 + 11238 0.69 0.517493
Target:  5'- ----gGCgAAacCCGuCCGGACCUUGCGc -3'
miRNA:   3'- aauagCGgUU--GGCuGGCCUGGAACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.