miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24965 5' -52 NC_005284.1 + 9651 0.66 0.849275
Target:  5'- -cGCAgGCCGAGCUCgCGGGcaugCGAgCGAu -3'
miRNA:   3'- uuCGU-CGGCUUGAG-GCUUaa--GCU-GCU- -5'
24965 5' -52 NC_005284.1 + 657 0.66 0.840367
Target:  5'- cGGGcCAGcCCGGcuaccgGCUCCGAGUU-GGCGAu -3'
miRNA:   3'- -UUC-GUC-GGCU------UGAGGCUUAAgCUGCU- -5'
24965 5' -52 NC_005284.1 + 4470 0.67 0.831227
Target:  5'- cGGCAcGCCGccaaauACUUCGAAcccUCGGCGAc -3'
miRNA:   3'- uUCGU-CGGCu-----UGAGGCUUa--AGCUGCU- -5'
24965 5' -52 NC_005284.1 + 19194 0.67 0.831227
Target:  5'- cAGGCuGCCuGAGuCUCCGcagcgCGACGAg -3'
miRNA:   3'- -UUCGuCGG-CUU-GAGGCuuaa-GCUGCU- -5'
24965 5' -52 NC_005284.1 + 47773 0.67 0.821865
Target:  5'- uAAGCAGaUCGAggcggcGCUCgCGGAggCGACGGg -3'
miRNA:   3'- -UUCGUC-GGCU------UGAG-GCUUaaGCUGCU- -5'
24965 5' -52 NC_005284.1 + 7371 0.67 0.80938
Target:  5'- -cGCGGCCGAucuggcguucgucgaUCUGAGUgCGACGGg -3'
miRNA:   3'- uuCGUCGGCUug-------------AGGCUUAaGCUGCU- -5'
24965 5' -52 NC_005284.1 + 16672 0.67 0.802518
Target:  5'- cGGCcGUCGAGCgugaggCCGGcgUCGGCGu -3'
miRNA:   3'- uUCGuCGGCUUGa-----GGCUuaAGCUGCu -5'
24965 5' -52 NC_005284.1 + 12252 0.67 0.792555
Target:  5'- -cGCAGCuuuCGAACggCGAGUUCGugGu -3'
miRNA:   3'- uuCGUCG---GCUUGagGCUUAAGCugCu -5'
24965 5' -52 NC_005284.1 + 37077 0.68 0.782414
Target:  5'- -uGCAGCCGAACgccgugaccUCCGuc-UUGAUGAc -3'
miRNA:   3'- uuCGUCGGCUUG---------AGGCuuaAGCUGCU- -5'
24965 5' -52 NC_005284.1 + 177 0.68 0.772108
Target:  5'- cGAGCcGCCGGACU--GGAUugUCGGCGAg -3'
miRNA:   3'- -UUCGuCGGCUUGAggCUUA--AGCUGCU- -5'
24965 5' -52 NC_005284.1 + 47311 0.68 0.761649
Target:  5'- cGGGCAaGCCGAGCUCgGAuuccuuUUCGucgcucGCGAa -3'
miRNA:   3'- -UUCGU-CGGCUUGAGgCUu-----AAGC------UGCU- -5'
24965 5' -52 NC_005284.1 + 18852 0.68 0.761649
Target:  5'- gGGGCAGCCGAGCa-CGGAUcaaagCGACu- -3'
miRNA:   3'- -UUCGUCGGCUUGagGCUUAa----GCUGcu -5'
24965 5' -52 NC_005284.1 + 22076 0.68 0.74032
Target:  5'- -uGCGGCCGGACUgCG----CGACGGa -3'
miRNA:   3'- uuCGUCGGCUUGAgGCuuaaGCUGCU- -5'
24965 5' -52 NC_005284.1 + 3719 0.68 0.74032
Target:  5'- aGAGCGGCCGGGCguugCCG-GUUCuGugGc -3'
miRNA:   3'- -UUCGUCGGCUUGa---GGCuUAAG-CugCu -5'
24965 5' -52 NC_005284.1 + 18677 0.69 0.729476
Target:  5'- --aCAGCCGcACgCCGAAUcgCGACGAc -3'
miRNA:   3'- uucGUCGGCuUGaGGCUUAa-GCUGCU- -5'
24965 5' -52 NC_005284.1 + 43207 0.69 0.729476
Target:  5'- uAGUcGCCGAGCUCCGcg-UCGAUc- -3'
miRNA:   3'- uUCGuCGGCUUGAGGCuuaAGCUGcu -5'
24965 5' -52 NC_005284.1 + 46596 0.69 0.696373
Target:  5'- uGGGCAacGCCGAACgucCCGAg--CGGCGGg -3'
miRNA:   3'- -UUCGU--CGGCUUGa--GGCUuaaGCUGCU- -5'
24965 5' -52 NC_005284.1 + 20718 0.69 0.691907
Target:  5'- gGGGCGGCCGAGgcguauUUCCGAGccgcgaagccagCGACGAu -3'
miRNA:   3'- -UUCGUCGGCUU------GAGGCUUaa----------GCUGCU- -5'
24965 5' -52 NC_005284.1 + 50295 0.69 0.685191
Target:  5'- cAAGCGGCCGAcCgucgCCGAggguucgaaguAUUUGGCGGc -3'
miRNA:   3'- -UUCGUCGGCUuGa---GGCU-----------UAAGCUGCU- -5'
24965 5' -52 NC_005284.1 + 11629 0.7 0.651368
Target:  5'- -uGCAGCgCGAACUCgGGGcgaugUCGAUGGg -3'
miRNA:   3'- uuCGUCG-GCUUGAGgCUUa----AGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.