miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24968 3' -55.4 NC_005284.1 + 54671 0.66 0.678173
Target:  5'- -uGUCACGCggcgaagacgGCGCGCGAgCGGUugCGGUg -3'
miRNA:   3'- cuUAGUGCG----------CGCGCGCU-GCUA--GUCGa -5'
24968 3' -55.4 NC_005284.1 + 53579 0.66 0.721486
Target:  5'- ----gGCGCGCGCccaUGcCGGUCAGCa -3'
miRNA:   3'- cuuagUGCGCGCGc--GCuGCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 51658 1.07 0.001367
Target:  5'- uGAAUCACGCGCGCGCGACGAUCAGCUu -3'
miRNA:   3'- -CUUAGUGCGCGCGCGCUGCUAGUCGA- -5'
24968 3' -55.4 NC_005284.1 + 50757 0.67 0.612089
Target:  5'- cAAUC-CGcCGUGCGCGAUGAUCGa-- -3'
miRNA:   3'- cUUAGuGC-GCGCGCGCUGCUAGUcga -5'
24968 3' -55.4 NC_005284.1 + 49339 0.77 0.176091
Target:  5'- ---gCACGCGUGCGCGACGAccgaacuaucggucgCAGCUu -3'
miRNA:   3'- cuuaGUGCGCGCGCGCUGCUa--------------GUCGA- -5'
24968 3' -55.4 NC_005284.1 + 48811 0.68 0.546602
Target:  5'- cGAAUCGCauCGUuCGCGACGAUCGGa- -3'
miRNA:   3'- -CUUAGUGc-GCGcGCGCUGCUAGUCga -5'
24968 3' -55.4 NC_005284.1 + 47059 0.67 0.634152
Target:  5'- gGAGUUACGC-CGCcgGCGGCGGcacgagcuUCGGCg -3'
miRNA:   3'- -CUUAGUGCGcGCG--CGCUGCU--------AGUCGa -5'
24968 3' -55.4 NC_005284.1 + 46262 0.66 0.678173
Target:  5'- -cAUCuACGCGCGUcCGAUG-UCGGCg -3'
miRNA:   3'- cuUAG-UGCGCGCGcGCUGCuAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 45953 0.68 0.579149
Target:  5'- cGAUCugGUcaCGCGUGACGAUCcgaaGGCg -3'
miRNA:   3'- cUUAGugCGc-GCGCGCUGCUAG----UCGa -5'
24968 3' -55.4 NC_005284.1 + 45898 0.68 0.546602
Target:  5'- cGGUUGCcgugguCGCGCGCGAUGcgCAGCa -3'
miRNA:   3'- cUUAGUGc-----GCGCGCGCUGCuaGUCGa -5'
24968 3' -55.4 NC_005284.1 + 45558 0.7 0.43759
Target:  5'- ---cCGCGCGCgucaGCGCcucgacgagauuaccGACGGUCAGCUu -3'
miRNA:   3'- cuuaGUGCGCG----CGCG---------------CUGCUAGUCGA- -5'
24968 3' -55.4 NC_005284.1 + 45000 0.66 0.689095
Target:  5'- cGAcgUugGCGCGCGCcguuGCGAcgUgAGCUu -3'
miRNA:   3'- -CUuaGugCGCGCGCGc---UGCU--AgUCGA- -5'
24968 3' -55.4 NC_005284.1 + 43618 0.69 0.514661
Target:  5'- ---cCGCGCGCGgcggcCGCGGCGcgagcugcGUCAGCa -3'
miRNA:   3'- cuuaGUGCGCGC-----GCGCUGC--------UAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 42743 0.7 0.473319
Target:  5'- ---gCACGCGCcgaaaaccGCGCGA-GGUCGGCg -3'
miRNA:   3'- cuuaGUGCGCG--------CGCGCUgCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 41965 0.71 0.414649
Target:  5'- aGAGUC-CGCGgGCGCGaaGCGG-CGGCg -3'
miRNA:   3'- -CUUAGuGCGCgCGCGC--UGCUaGUCGa -5'
24968 3' -55.4 NC_005284.1 + 39601 0.67 0.656207
Target:  5'- ----gACGCGaGCGCGAacugguCGGUCGGCa -3'
miRNA:   3'- cuuagUGCGCgCGCGCU------GCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 38886 0.69 0.535878
Target:  5'- gGAAUCagcaccgauaGCGCGCGCaccgccucugcgGCGACGAgaCGGCa -3'
miRNA:   3'- -CUUAG----------UGCGCGCG------------CGCUGCUa-GUCGa -5'
24968 3' -55.4 NC_005284.1 + 38071 0.68 0.545527
Target:  5'- uGGAUUugGCGCacccacgGCGCGuCGGacgUCAGCg -3'
miRNA:   3'- -CUUAGugCGCG-------CGCGCuGCU---AGUCGa -5'
24968 3' -55.4 NC_005284.1 + 37646 0.67 0.656207
Target:  5'- ---gCACG-GC-CGCGACGAUgAGCUu -3'
miRNA:   3'- cuuaGUGCgCGcGCGCUGCUAgUCGA- -5'
24968 3' -55.4 NC_005284.1 + 35458 0.66 0.678173
Target:  5'- -cGUCGCGCuggaucuCGCGCGguGCGAgCAGCUu -3'
miRNA:   3'- cuUAGUGCGc------GCGCGC--UGCUaGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.