miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25032 3' -50.2 NC_005336.1 + 136878 1.14 0.004992
Target:  5'- aGGUCAACAGUCGACUCACUCACUCUCg -3'
miRNA:   3'- -CCAGUUGUCAGCUGAGUGAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 136878 1.14 0.004992
Target:  5'- aGGUCAACAGUCGACUCACUCACUCUCg -3'
miRNA:   3'- -CCAGUUGUCAGCUGAGUGAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 137972 0.89 0.166518
Target:  5'- aGUCGACAGUCGACacUCACUCGCUCg- -3'
miRNA:   3'- cCAGUUGUCAGCUG--AGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 137972 0.89 0.166518
Target:  5'- aGUCGACAGUCGACacUCACUCGCUCg- -3'
miRNA:   3'- cCAGUUGUCAGCUG--AGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 137249 0.88 0.194865
Target:  5'- aGUCGACAGUCcACUCACUCACUCa- -3'
miRNA:   3'- cCAGUUGUCAGcUGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 137249 0.88 0.194865
Target:  5'- aGUCGACAGUCcACUCACUCACUCa- -3'
miRNA:   3'- cCAGUUGUCAGcUGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 137037 0.82 0.421913
Target:  5'- --aUAACAGUUaACUCACUCACUCUCu -3'
miRNA:   3'- ccaGUUGUCAGcUGAGUGAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 137037 0.82 0.421913
Target:  5'- --aUAACAGUUaACUCACUCACUCUCu -3'
miRNA:   3'- ccaGUUGUCAGcUGAGUGAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 136976 0.77 0.656124
Target:  5'- aGUCAACAGgCaACUCGCUCGCUCg- -3'
miRNA:   3'- cCAGUUGUCaGcUGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 136976 0.77 0.656124
Target:  5'- aGUCAACAGgCaACUCGCUCGCUCg- -3'
miRNA:   3'- cCAGUUGUCaGcUGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 1838 0.76 0.698417
Target:  5'- uGUCGACuGUCGACUCGuuaacugucCUCuACUCUCu -3'
miRNA:   3'- cCAGUUGuCAGCUGAGU---------GAG-UGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 1838 0.76 0.698417
Target:  5'- uGUCGACuGUCGACUCGuuaacugucCUCuACUCUCu -3'
miRNA:   3'- cCAGUUGuCAGCUGAGU---------GAG-UGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 137315 0.75 0.739742
Target:  5'- aGagAACAGUCaACUCGCUCACUCa- -3'
miRNA:   3'- cCagUUGUCAGcUGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 137315 0.75 0.739742
Target:  5'- aGagAACAGUCaACUCGCUCACUCa- -3'
miRNA:   3'- cCagUUGUCAGcUGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 129874 0.75 0.779437
Target:  5'- uGUCGACAGUCgccugGACUCGCUgcugcaccagCACUUUCa -3'
miRNA:   3'- cCAGUUGUCAG-----CUGAGUGA----------GUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 91446 0.74 0.789028
Target:  5'- aGUCGGCGGUCGcGCUagCGCUCGCgCUCu -3'
miRNA:   3'- cCAGUUGUCAGC-UGA--GUGAGUGaGAG- -5'
25032 3' -50.2 NC_005336.1 + 2879 0.74 0.789028
Target:  5'- aGUUGACuGUUGACUUguuCUCACUCUCu -3'
miRNA:   3'- cCAGUUGuCAGCUGAGu--GAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 2879 0.74 0.789028
Target:  5'- aGUUGACuGUUGACUUguuCUCACUCUCu -3'
miRNA:   3'- cCAGUUGuCAGCUGAGu--GAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 137190 0.74 0.80774
Target:  5'- aGUUAACGGUCGAC-CACUCGCcCg- -3'
miRNA:   3'- cCAGUUGUCAGCUGaGUGAGUGaGag -5'
25032 3' -50.2 NC_005336.1 + 2561 0.74 0.80774
Target:  5'- aGUgGACuGUCGACUCGCUauccguuCUCUCg -3'
miRNA:   3'- cCAgUUGuCAGCUGAGUGAgu-----GAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.