Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25032 | 3' | -50.2 | NC_005336.1 | + | 137116 | 0.68 | 0.980442 |
Target: 5'- -cUCGAUagaacaAGUCGuuaACUCACUCGCUCg- -3' miRNA: 3'- ccAGUUG------UCAGC---UGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 136931 | 0.73 | 0.867326 |
Target: 5'- aGUCAACAGUCaACUCGCUCAg---- -3' miRNA: 3'- cCAGUUGUCAGcUGAGUGAGUgagag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 55159 | 0.73 | 0.867326 |
Target: 5'- cGGUCAuCGGgccCGACUC-CgCGCUCUCg -3' miRNA: 3'- -CCAGUuGUCa--GCUGAGuGaGUGAGAG- -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 2725 | 0.71 | 0.909605 |
Target: 5'- --cUAACAGUUGACUUguGCUCuuuCUCUCa -3' miRNA: 3'- ccaGUUGUCAGCUGAG--UGAGu--GAGAG- -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 51093 | 0.71 | 0.931141 |
Target: 5'- aGGcCAACgccuccuacagggaGGUCGGCUC-CUCGCUCg- -3' miRNA: 3'- -CCaGUUG--------------UCAGCUGAGuGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 1004 | 0.7 | 0.942741 |
Target: 5'- aGGUCcucuGGCGGUCGGC-CGCUcCGCUCc- -3' miRNA: 3'- -CCAG----UUGUCAGCUGaGUGA-GUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 2931 | 0.68 | 0.97559 |
Target: 5'- aGUCGACuGUUGACcuguucgCACUCGCUuaCUCc -3' miRNA: 3'- cCAGUUGuCAGCUGa------GUGAGUGA--GAG- -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 2107 | 0.68 | 0.978115 |
Target: 5'- uGGUUcGCucGUCGACucgUCACUCGUUCUCu -3' miRNA: 3'- -CCAGuUGu-CAGCUG---AGUGAGUGAGAG- -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137840 | 0.68 | 0.980442 |
Target: 5'- aGUUAACAGguuaaucACUCACUCACaCUCa -3' miRNA: 3'- cCAGUUGUCagc----UGAGUGAGUGaGAG- -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137087 | 0.73 | 0.851339 |
Target: 5'- aGUCAACuGUuagCGcACUCGCUCACUCg- -3' miRNA: 3'- cCAGUUGuCA---GC-UGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137190 | 0.74 | 0.80774 |
Target: 5'- aGUUAACGGUCGAC-CACUCGCcCg- -3' miRNA: 3'- cCAGUUGUCAGCUGaGUGAGUGaGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 2561 | 0.74 | 0.80774 |
Target: 5'- aGUgGACuGUCGACUCGCUauccguuCUCUCg -3' miRNA: 3'- cCAgUUGuCAGCUGAGUGAgu-----GAGAG- -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137972 | 0.89 | 0.166518 |
Target: 5'- aGUCGACAGUCGACacUCACUCGCUCg- -3' miRNA: 3'- cCAGUUGUCAGCUG--AGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137249 | 0.88 | 0.194865 |
Target: 5'- aGUCGACAGUCcACUCACUCACUCa- -3' miRNA: 3'- cCAGUUGUCAGcUGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137037 | 0.82 | 0.421913 |
Target: 5'- --aUAACAGUUaACUCACUCACUCUCu -3' miRNA: 3'- ccaGUUGUCAGcUGAGUGAGUGAGAG- -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 136976 | 0.77 | 0.656124 |
Target: 5'- aGUCAACAGgCaACUCGCUCGCUCg- -3' miRNA: 3'- cCAGUUGUCaGcUGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 1838 | 0.76 | 0.698417 |
Target: 5'- uGUCGACuGUCGACUCGuuaacugucCUCuACUCUCu -3' miRNA: 3'- cCAGUUGuCAGCUGAGU---------GAG-UGAGAG- -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137315 | 0.75 | 0.739742 |
Target: 5'- aGagAACAGUCaACUCGCUCACUCa- -3' miRNA: 3'- cCagUUGUCAGcUGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 129874 | 0.75 | 0.779437 |
Target: 5'- uGUCGACAGUCgccugGACUCGCUgcugcaccagCACUUUCa -3' miRNA: 3'- cCAGUUGUCAG-----CUGAGUGA----------GUGAGAG- -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 2879 | 0.74 | 0.789028 |
Target: 5'- aGUUGACuGUUGACUUguuCUCACUCUCu -3' miRNA: 3'- cCAGUUGuCAGCUGAGu--GAGUGAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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