miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25032 3' -50.2 NC_005336.1 + 1004 0.7 0.942741
Target:  5'- aGGUCcucuGGCGGUCGGC-CGCUcCGCUCc- -3'
miRNA:   3'- -CCAG----UUGUCAGCUGaGUGA-GUGAGag -5'
25032 3' -50.2 NC_005336.1 + 1004 0.7 0.942741
Target:  5'- aGGUCcucuGGCGGUCGGC-CGCUcCGCUCc- -3'
miRNA:   3'- -CCAG----UUGUCAGCUGaGUGA-GUGAGag -5'
25032 3' -50.2 NC_005336.1 + 1779 0.68 0.982579
Target:  5'- uGGcgagCGAguGUCGACUCGuuaucguguuCUCuACUCUCu -3'
miRNA:   3'- -CCa---GUUguCAGCUGAGU----------GAG-UGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 1779 0.68 0.982579
Target:  5'- uGGcgagCGAguGUCGACUCGuuaucguguuCUCuACUCUCu -3'
miRNA:   3'- -CCa---GUUguCAGCUGAGU----------GAG-UGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 1838 0.76 0.698417
Target:  5'- uGUCGACuGUCGACUCGuuaacugucCUCuACUCUCu -3'
miRNA:   3'- cCAGUUGuCAGCUGAGU---------GAG-UGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 1838 0.76 0.698417
Target:  5'- uGUCGACuGUCGACUCGuuaacugucCUCuACUCUCu -3'
miRNA:   3'- cCAGUUGuCAGCUGAGU---------GAG-UGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 2107 0.68 0.978115
Target:  5'- uGGUUcGCucGUCGACucgUCACUCGUUCUCu -3'
miRNA:   3'- -CCAGuUGu-CAGCUG---AGUGAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 2107 0.68 0.978115
Target:  5'- uGGUUcGCucGUCGACucgUCACUCGUUCUCu -3'
miRNA:   3'- -CCAGuUGu-CAGCUG---AGUGAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 2561 0.74 0.80774
Target:  5'- aGUgGACuGUCGACUCGCUauccguuCUCUCg -3'
miRNA:   3'- cCAgUUGuCAGCUGAGUGAgu-----GAGAG- -5'
25032 3' -50.2 NC_005336.1 + 2561 0.74 0.80774
Target:  5'- aGUgGACuGUCGACUCGCUauccguuCUCUCg -3'
miRNA:   3'- cCAgUUGuCAGCUGAGUGAgu-----GAGAG- -5'
25032 3' -50.2 NC_005336.1 + 2725 0.71 0.909605
Target:  5'- --cUAACAGUUGACUUguGCUCuuuCUCUCa -3'
miRNA:   3'- ccaGUUGUCAGCUGAG--UGAGu--GAGAG- -5'
25032 3' -50.2 NC_005336.1 + 2725 0.71 0.909605
Target:  5'- --cUAACAGUUGACUUguGCUCuuuCUCUCa -3'
miRNA:   3'- ccaGUUGUCAGCUGAG--UGAGu--GAGAG- -5'
25032 3' -50.2 NC_005336.1 + 2879 0.74 0.789028
Target:  5'- aGUUGACuGUUGACUUguuCUCACUCUCu -3'
miRNA:   3'- cCAGUUGuCAGCUGAGu--GAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 2879 0.74 0.789028
Target:  5'- aGUUGACuGUUGACUUguuCUCACUCUCu -3'
miRNA:   3'- cCAGUUGuCAGCUGAGu--GAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 2931 0.68 0.97559
Target:  5'- aGUCGACuGUUGACcuguucgCACUCGCUuaCUCc -3'
miRNA:   3'- cCAGUUGuCAGCUGa------GUGAGUGA--GAG- -5'
25032 3' -50.2 NC_005336.1 + 2931 0.68 0.97559
Target:  5'- aGUCGACuGUUGACcuguucgCACUCGCUuaCUCc -3'
miRNA:   3'- cCAGUUGuCAGCUGa------GUGAGUGA--GAG- -5'
25032 3' -50.2 NC_005336.1 + 7219 0.66 0.996194
Target:  5'- --gCGACAGUcCGGC-CACUCGCggUCg -3'
miRNA:   3'- ccaGUUGUCA-GCUGaGUGAGUGagAG- -5'
25032 3' -50.2 NC_005336.1 + 17235 0.67 0.987942
Target:  5'- cGG-CAGCAGUCGcACUCAUcgccCACUUguUCg -3'
miRNA:   3'- -CCaGUUGUCAGC-UGAGUGa---GUGAG--AG- -5'
25032 3' -50.2 NC_005336.1 + 47278 0.67 0.990737
Target:  5'- cGG-CAGCGgacuggagauGUCGucCUC-CUCGCUCUCg -3'
miRNA:   3'- -CCaGUUGU----------CAGCu-GAGuGAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 51093 0.71 0.931141
Target:  5'- aGGcCAACgccuccuacagggaGGUCGGCUC-CUCGCUCg- -3'
miRNA:   3'- -CCaGUUG--------------UCAGCUGAGuGAGUGAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.