Results 21 - 40 of 498 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25033 | 3' | -55.7 | NC_005336.1 | + | 125404 | 0.77 | 0.326929 |
Target: 5'- cGCCACAGUgGugcucGCGCCGCCAcUGC-CCCg -3' miRNA: 3'- -UGGUGUCGgU-----UGUGGUGGU-ACGuGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 10506 | 0.77 | 0.334513 |
Target: 5'- cGCCuGCGGCCAGCAgCCGCC--GCACCUc -3' miRNA: 3'- -UGG-UGUCGGUUGU-GGUGGuaCGUGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 53611 | 0.77 | 0.334513 |
Target: 5'- -aCGCAGCCGACauggACCGCCuccGCACCUg -3' miRNA: 3'- ugGUGUCGGUUG----UGGUGGua-CGUGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 3939 | 0.77 | 0.345346 |
Target: 5'- cGCCGCGGCgCAgcgccgcgcgcagcaGCGCCGCCAgcgGCAgCCg -3' miRNA: 3'- -UGGUGUCG-GU---------------UGUGGUGGUa--CGUgGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 3190 | 0.76 | 0.350065 |
Target: 5'- uGCCGCAGCCAcuccgaGCGCgGCCGcGCGgCCg -3' miRNA: 3'- -UGGUGUCGGU------UGUGgUGGUaCGUgGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 3190 | 0.76 | 0.350065 |
Target: 5'- uGCCGCAGCCAcuccgaGCGCgGCCGcGCGgCCg -3' miRNA: 3'- -UGGUGUCGGU------UGUGgUGGUaCGUgGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 132304 | 0.76 | 0.350065 |
Target: 5'- gACUugAGCCGcucguGCgACCGCCGcGCGCCCg -3' miRNA: 3'- -UGGugUCGGU-----UG-UGGUGGUaCGUGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 100447 | 0.76 | 0.366124 |
Target: 5'- uGCCGcCGGCCAugACCGgCA-GCACCUa -3' miRNA: 3'- -UGGU-GUCGGUugUGGUgGUaCGUGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 71347 | 0.76 | 0.374342 |
Target: 5'- uCCGCGGCggcgcgcccggCGGCGCCACUAgccGCGCCCg -3' miRNA: 3'- uGGUGUCG-----------GUUGUGGUGGUa--CGUGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 133537 | 0.76 | 0.382683 |
Target: 5'- gACCGCGGCCGGCGCgACCuuccGCuucgaggaGCCCg -3' miRNA: 3'- -UGGUGUCGGUUGUGgUGGua--CG--------UGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 16176 | 0.75 | 0.391148 |
Target: 5'- aGCCGCAGCgu-CGCCACguUgGCGCCCa -3' miRNA: 3'- -UGGUGUCGguuGUGGUGguA-CGUGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 80306 | 0.75 | 0.391148 |
Target: 5'- uCCACGGCCAGCGCgGCUGUGCucACgCg -3' miRNA: 3'- uGGUGUCGGUUGUGgUGGUACG--UGgG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 129744 | 0.75 | 0.391148 |
Target: 5'- uACCGCuucAGCagCGACGgCACCGUGCGCCUg -3' miRNA: 3'- -UGGUG---UCG--GUUGUgGUGGUACGUGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 5667 | 0.75 | 0.398007 |
Target: 5'- uCCGCGGCCGggaGCGCCGCCAgcgucucugcgaGCGCCg -3' miRNA: 3'- uGGUGUCGGU---UGUGGUGGUa-----------CGUGGg -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 119513 | 0.75 | 0.399734 |
Target: 5'- cACCGCGGCC-GCACUcccgcagccccaGCC-UGCGCCCc -3' miRNA: 3'- -UGGUGUCGGuUGUGG------------UGGuACGUGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 110273 | 0.75 | 0.408439 |
Target: 5'- uCCACGGCCAGCACgGCCu--CGCCg -3' miRNA: 3'- uGGUGUCGGUUGUGgUGGuacGUGGg -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 124901 | 0.75 | 0.408439 |
Target: 5'- --gGCAGCCAACugCGCCGgagGCGCgCg -3' miRNA: 3'- uggUGUCGGUUGugGUGGUa--CGUGgG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 68289 | 0.75 | 0.417262 |
Target: 5'- uCCGCGGgCAugGCCACguUGCcGCCCa -3' miRNA: 3'- uGGUGUCgGUugUGGUGguACG-UGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 126661 | 0.75 | 0.4262 |
Target: 5'- cCCACAGCCGACGaggACCucgGCGCCUg -3' miRNA: 3'- uGGUGUCGGUUGUgg-UGGua-CGUGGG- -5' |
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25033 | 3' | -55.7 | NC_005336.1 | + | 36933 | 0.75 | 0.4262 |
Target: 5'- uCCAUGGCCAGCGCCucgaaGUaGCGCCCg -3' miRNA: 3'- uGGUGUCGGUUGUGGugg--UA-CGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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