miRNA display CGI


Results 1 - 20 of 498 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 3' -55.7 NC_005336.1 + 136197 1.1 0.00202
Target:  5'- cACCACAGCCAACACCACCAUGCACCCc -3'
miRNA:   3'- -UGGUGUCGGUUGUGGUGGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 136197 1.1 0.00202
Target:  5'- cACCACAGCCAACACCACCAUGCACCCc -3'
miRNA:   3'- -UGGUGUCGGUUGUGGUGGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 100590 0.84 0.123401
Target:  5'- cACCGCGGCCAcggaggGCACCuucCCGUGCACCa -3'
miRNA:   3'- -UGGUGUCGGU------UGUGGu--GGUACGUGGg -5'
25033 3' -55.7 NC_005336.1 + 31098 0.83 0.148258
Target:  5'- uACCGCAgGCC--CACgGCCAUGCACCCg -3'
miRNA:   3'- -UGGUGU-CGGuuGUGgUGGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 48778 0.82 0.160248
Target:  5'- uGCuCGCgaaGGCCAGCACCACCGUGCGCa- -3'
miRNA:   3'- -UG-GUG---UCGGUUGUGGUGGUACGUGgg -5'
25033 3' -55.7 NC_005336.1 + 11767 0.82 0.164436
Target:  5'- cGCCGCGcagcGCCAGCGCCAUCAcGCACUCg -3'
miRNA:   3'- -UGGUGU----CGGUUGUGGUGGUaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 3805 0.81 0.177593
Target:  5'- cGCCGCGGCCAGcCGCUGCCcgcgcGCGCCCg -3'
miRNA:   3'- -UGGUGUCGGUU-GUGGUGGua---CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 3805 0.81 0.177593
Target:  5'- cGCCGCGGCCAGcCGCUGCCcgcgcGCGCCCg -3'
miRNA:   3'- -UGGUGUCGGUU-GUGGUGGua---CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 12499 0.8 0.201603
Target:  5'- gAUCACGGCCGccuccGCGCCGcCCAUGCAgCCg -3'
miRNA:   3'- -UGGUGUCGGU-----UGUGGU-GGUACGUgGG- -5'
25033 3' -55.7 NC_005336.1 + 31804 0.8 0.228385
Target:  5'- -aCAUGGCC---ACCGCCAUGCACCCg -3'
miRNA:   3'- ugGUGUCGGuugUGGUGGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 44826 0.79 0.24827
Target:  5'- cCCACGGCCGGgcagcucgccgcaguCGCCGCCGgcGCGCCCg -3'
miRNA:   3'- uGGUGUCGGUU---------------GUGGUGGUa-CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 23956 0.79 0.254385
Target:  5'- aACCACAGUCGcagagguggagaucgGCACCGCCAgcgcGCACCg -3'
miRNA:   3'- -UGGUGUCGGU---------------UGUGGUGGUa---CGUGGg -5'
25033 3' -55.7 NC_005336.1 + 22700 0.79 0.258114
Target:  5'- cCCGCGGUgGuCGCgGCCAUGCGCCCc -3'
miRNA:   3'- uGGUGUCGgUuGUGgUGGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 61986 0.79 0.258114
Target:  5'- uACUGCAGCCucuuCGgCACCGUGCGCCUc -3'
miRNA:   3'- -UGGUGUCGGuu--GUgGUGGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 42504 0.78 0.264427
Target:  5'- cGCCACGGCCGcGCGCCACUgcgGCACUa -3'
miRNA:   3'- -UGGUGUCGGU-UGUGGUGGua-CGUGGg -5'
25033 3' -55.7 NC_005336.1 + 24199 0.78 0.297175
Target:  5'- uACCGCGacgcgcuguucgcGCCGuACGCCugCAUGCACCUc -3'
miRNA:   3'- -UGGUGU-------------CGGU-UGUGGugGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 83923 0.78 0.297175
Target:  5'- cACCACgaGGUCGcugucgacguucgGCGCCACCAcGCGCCCg -3'
miRNA:   3'- -UGGUG--UCGGU-------------UGUGGUGGUaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 3835 0.78 0.297875
Target:  5'- cGCCGCGcGCagCAGCGCCGCCGccgaGCGCCCg -3'
miRNA:   3'- -UGGUGU-CG--GUUGUGGUGGUa---CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 3835 0.78 0.297875
Target:  5'- cGCCGCGcGCagCAGCGCCGCCGccgaGCGCCCg -3'
miRNA:   3'- -UGGUGU-CG--GUUGUGGUGGUa---CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 36036 0.77 0.304947
Target:  5'- cCCGCAGUgcGCGuCCugCGUGCGCCCg -3'
miRNA:   3'- uGGUGUCGguUGU-GGugGUACGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.