miRNA display CGI


Results 1 - 20 of 498 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 3' -55.7 NC_005336.1 + 3190 0.76 0.350065
Target:  5'- uGCCGCAGCCAcuccgaGCGCgGCCGcGCGgCCg -3'
miRNA:   3'- -UGGUGUCGGU------UGUGgUGGUaCGUgGG- -5'
25033 3' -55.7 NC_005336.1 + 3190 0.76 0.350065
Target:  5'- uGCCGCAGCCAcuccgaGCGCgGCCGcGCGgCCg -3'
miRNA:   3'- -UGGUGUCGGU------UGUGgUGGUaCGUgGG- -5'
25033 3' -55.7 NC_005336.1 + 3406 0.69 0.726163
Target:  5'- uCCGCGuCCGcgacCGCCGCCAUGUGCCg -3'
miRNA:   3'- uGGUGUcGGUu---GUGGUGGUACGUGGg -5'
25033 3' -55.7 NC_005336.1 + 3406 0.69 0.726163
Target:  5'- uCCGCGuCCGcgacCGCCGCCAUGUGCCg -3'
miRNA:   3'- uGGUGUcGGUu---GUGGUGGUACGUGGg -5'
25033 3' -55.7 NC_005336.1 + 3805 0.81 0.177593
Target:  5'- cGCCGCGGCCAGcCGCUGCCcgcgcGCGCCCg -3'
miRNA:   3'- -UGGUGUCGGUU-GUGGUGGua---CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 3805 0.81 0.177593
Target:  5'- cGCCGCGGCCAGcCGCUGCCcgcgcGCGCCCg -3'
miRNA:   3'- -UGGUGUCGGUU-GUGGUGGua---CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 3835 0.78 0.297875
Target:  5'- cGCCGCGcGCagCAGCGCCGCCGccgaGCGCCCg -3'
miRNA:   3'- -UGGUGU-CG--GUUGUGGUGGUa---CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 3835 0.78 0.297875
Target:  5'- cGCCGCGcGCagCAGCGCCGCCGccgaGCGCCCg -3'
miRNA:   3'- -UGGUGU-CG--GUUGUGGUGGUa---CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 3886 0.72 0.592397
Target:  5'- gGCCGCGGCCccGCGCCgcGCCAgcagcagcgGCAgCCg -3'
miRNA:   3'- -UGGUGUCGGu-UGUGG--UGGUa--------CGUgGG- -5'
25033 3' -55.7 NC_005336.1 + 3886 0.72 0.592397
Target:  5'- gGCCGCGGCCccGCGCCgcGCCAgcagcagcgGCAgCCg -3'
miRNA:   3'- -UGGUGUCGGu-UGUGG--UGGUa--------CGUgGG- -5'
25033 3' -55.7 NC_005336.1 + 3939 0.77 0.345346
Target:  5'- cGCCGCGGCgCAgcgccgcgcgcagcaGCGCCGCCAgcgGCAgCCg -3'
miRNA:   3'- -UGGUGUCG-GU---------------UGUGGUGGUa--CGUgGG- -5'
25033 3' -55.7 NC_005336.1 + 4206 0.66 0.890755
Target:  5'- uUCACuccGCCAuuaAUACCGCCGUuuacGCugCCu -3'
miRNA:   3'- uGGUGu--CGGU---UGUGGUGGUA----CGugGG- -5'
25033 3' -55.7 NC_005336.1 + 4536 0.68 0.811704
Target:  5'- uACCACcaUUAACACCACCAUuaACaCCg -3'
miRNA:   3'- -UGGUGucGGUUGUGGUGGUAcgUG-GG- -5'
25033 3' -55.7 NC_005336.1 + 4548 0.69 0.755772
Target:  5'- gACUACGGCUAACACU--CAgGCACUCa -3'
miRNA:   3'- -UGGUGUCGGUUGUGGugGUaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 4621 0.69 0.76543
Target:  5'- uAUCACAG-CAGCGUCACCAgcUGCAgCCg -3'
miRNA:   3'- -UGGUGUCgGUUGUGGUGGU--ACGUgGG- -5'
25033 3' -55.7 NC_005336.1 + 4875 0.71 0.654598
Target:  5'- uACCACAcCCAccauuaACACCACCAUuaACaCCa -3'
miRNA:   3'- -UGGUGUcGGU------UGUGGUGGUAcgUG-GG- -5'
25033 3' -55.7 NC_005336.1 + 5196 0.69 0.736129
Target:  5'- uACCACAcuguaucuCCAcUGCCACCAcaaGCACCCg -3'
miRNA:   3'- -UGGUGUc-------GGUuGUGGUGGUa--CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 5316 0.66 0.903934
Target:  5'- aGCgCGCGGCgCAGCagcgaaauuGCCACCAcgccgaGCACCg -3'
miRNA:   3'- -UG-GUGUCG-GUUG---------UGGUGGUa-----CGUGGg -5'
25033 3' -55.7 NC_005336.1 + 5475 0.66 0.903934
Target:  5'- uUCGCGGCCgcGugGCCGCUGUuCACCa -3'
miRNA:   3'- uGGUGUCGG--UugUGGUGGUAcGUGGg -5'
25033 3' -55.7 NC_005336.1 + 5667 0.75 0.398007
Target:  5'- uCCGCGGCCGggaGCGCCGCCAgcgucucugcgaGCGCCg -3'
miRNA:   3'- uGGUGUCGGU---UGUGGUGGUa-----------CGUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.