miRNA display CGI


Results 1 - 20 of 498 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 3' -55.7 NC_005336.1 + 72430 0.75 0.432523
Target:  5'- uGCCGCAugucgcGCCGGCAggaggacgacuaccUCACCGUGCGCCg -3'
miRNA:   3'- -UGGUGU------CGGUUGU--------------GGUGGUACGUGGg -5'
25033 3' -55.7 NC_005336.1 + 132304 0.76 0.350065
Target:  5'- gACUugAGCCGcucguGCgACCGCCGcGCGCCCg -3'
miRNA:   3'- -UGGugUCGGU-----UG-UGGUGGUaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 3190 0.76 0.350065
Target:  5'- uGCCGCAGCCAcuccgaGCGCgGCCGcGCGgCCg -3'
miRNA:   3'- -UGGUGUCGGU------UGUGgUGGUaCGUgGG- -5'
25033 3' -55.7 NC_005336.1 + 100447 0.76 0.366124
Target:  5'- uGCCGcCGGCCAugACCGgCA-GCACCUa -3'
miRNA:   3'- -UGGU-GUCGGUugUGGUgGUaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 133537 0.76 0.382683
Target:  5'- gACCGCGGCCGGCGCgACCuuccGCuucgaggaGCCCg -3'
miRNA:   3'- -UGGUGUCGGUUGUGgUGGua--CG--------UGGG- -5'
25033 3' -55.7 NC_005336.1 + 80306 0.75 0.391148
Target:  5'- uCCACGGCCAGCGCgGCUGUGCucACgCg -3'
miRNA:   3'- uGGUGUCGGUUGUGgUGGUACG--UGgG- -5'
25033 3' -55.7 NC_005336.1 + 119513 0.75 0.399734
Target:  5'- cACCGCGGCC-GCACUcccgcagccccaGCC-UGCGCCCc -3'
miRNA:   3'- -UGGUGUCGGuUGUGG------------UGGuACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 110273 0.75 0.408439
Target:  5'- uCCACGGCCAGCACgGCCu--CGCCg -3'
miRNA:   3'- uGGUGUCGGUUGUGgUGGuacGUGGg -5'
25033 3' -55.7 NC_005336.1 + 126661 0.75 0.4262
Target:  5'- cCCACAGCCGACGaggACCucgGCGCCUg -3'
miRNA:   3'- uGGUGUCGGUUGUgg-UGGua-CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 3939 0.77 0.345346
Target:  5'- cGCCGCGGCgCAgcgccgcgcgcagcaGCGCCGCCAgcgGCAgCCg -3'
miRNA:   3'- -UGGUGUCG-GU---------------UGUGGUGGUa--CGUgGG- -5'
25033 3' -55.7 NC_005336.1 + 125404 0.77 0.326929
Target:  5'- cGCCACAGUgGugcucGCGCCGCCAcUGC-CCCg -3'
miRNA:   3'- -UGGUGUCGgU-----UGUGGUGGU-ACGuGGG- -5'
25033 3' -55.7 NC_005336.1 + 36036 0.77 0.304947
Target:  5'- cCCGCAGUgcGCGuCCugCGUGCGCCCg -3'
miRNA:   3'- uGGUGUCGguUGU-GGugGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 31098 0.83 0.148258
Target:  5'- uACCGCAgGCC--CACgGCCAUGCACCCg -3'
miRNA:   3'- -UGGUGU-CGGuuGUGgUGGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 48778 0.82 0.160248
Target:  5'- uGCuCGCgaaGGCCAGCACCACCGUGCGCa- -3'
miRNA:   3'- -UG-GUG---UCGGUUGUGGUGGUACGUGgg -5'
25033 3' -55.7 NC_005336.1 + 3805 0.81 0.177593
Target:  5'- cGCCGCGGCCAGcCGCUGCCcgcgcGCGCCCg -3'
miRNA:   3'- -UGGUGUCGGUU-GUGGUGGua---CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 31804 0.8 0.228385
Target:  5'- -aCAUGGCC---ACCGCCAUGCACCCg -3'
miRNA:   3'- ugGUGUCGGuugUGGUGGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 23956 0.79 0.254385
Target:  5'- aACCACAGUCGcagagguggagaucgGCACCGCCAgcgcGCACCg -3'
miRNA:   3'- -UGGUGUCGGU---------------UGUGGUGGUa---CGUGGg -5'
25033 3' -55.7 NC_005336.1 + 22700 0.79 0.258114
Target:  5'- cCCGCGGUgGuCGCgGCCAUGCGCCCc -3'
miRNA:   3'- uGGUGUCGgUuGUGgUGGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 24199 0.78 0.297175
Target:  5'- uACCGCGacgcgcuguucgcGCCGuACGCCugCAUGCACCUc -3'
miRNA:   3'- -UGGUGU-------------CGGU-UGUGGugGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 3835 0.78 0.297875
Target:  5'- cGCCGCGcGCagCAGCGCCGCCGccgaGCGCCCg -3'
miRNA:   3'- -UGGUGU-CG--GUUGUGGUGGUa---CGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.