miRNA display CGI


Results 1 - 20 of 498 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 3' -55.7 NC_005336.1 + 84187 0.66 0.876641
Target:  5'- aGCaCGCGGCgGGCAUCACguuCAgagGCACCg -3'
miRNA:   3'- -UG-GUGUCGgUUGUGGUG---GUa--CGUGGg -5'
25033 3' -55.7 NC_005336.1 + 98729 0.66 0.876641
Target:  5'- gGCCccCAGCgcguaCGACACCACCAcGuCGCCg -3'
miRNA:   3'- -UGGu-GUCG-----GUUGUGGUGGUaC-GUGGg -5'
25033 3' -55.7 NC_005336.1 + 127463 0.66 0.883106
Target:  5'- cGCCACGGaCGcguacggGCGCaCGCCAcUGCACgCCu -3'
miRNA:   3'- -UGGUGUCgGU-------UGUG-GUGGU-ACGUG-GG- -5'
25033 3' -55.7 NC_005336.1 + 9589 0.66 0.876641
Target:  5'- -gCGCAGCCcGCggaagGCCGCCAUGuCGCa- -3'
miRNA:   3'- ugGUGUCGGuUG-----UGGUGGUAC-GUGgg -5'
25033 3' -55.7 NC_005336.1 + 105065 0.66 0.876641
Target:  5'- -gCGCGGCuCAACGgCACgCAcgucUGCAUCCg -3'
miRNA:   3'- ugGUGUCG-GUUGUgGUG-GU----ACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 69830 0.66 0.869244
Target:  5'- -aCACGGCCGuguACCGCCAcgGCGCg- -3'
miRNA:   3'- ugGUGUCGGUug-UGGUGGUa-CGUGgg -5'
25033 3' -55.7 NC_005336.1 + 94517 0.66 0.876641
Target:  5'- aACacgaACAGCCcgAGCAgCAgCAcgGCGCCCa -3'
miRNA:   3'- -UGg---UGUCGG--UUGUgGUgGUa-CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 51598 0.66 0.876641
Target:  5'- cGCCGCGagcGCCuuCGCCGCUGgacgcGUACCUg -3'
miRNA:   3'- -UGGUGU---CGGuuGUGGUGGUa----CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 38356 0.66 0.874445
Target:  5'- gGCgCGCAGCgugggcgugcucggCAACGCggCGCCGcugGCGCCCg -3'
miRNA:   3'- -UG-GUGUCG--------------GUUGUG--GUGGUa--CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 54087 0.66 0.868492
Target:  5'- gACCACGGCCuggcugggcuugaGGCACgCGCa--GCGCUCg -3'
miRNA:   3'- -UGGUGUCGG-------------UUGUG-GUGguaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 125750 0.66 0.876641
Target:  5'- -gCGCGGCCGcCGCCAUgAUcGCGgCCg -3'
miRNA:   3'- ugGUGUCGGUuGUGGUGgUA-CGUgGG- -5'
25033 3' -55.7 NC_005336.1 + 70446 0.66 0.869244
Target:  5'- cCCGCGGacuACGCCAacgaCAUGCuguGCCCg -3'
miRNA:   3'- uGGUGUCgguUGUGGUg---GUACG---UGGG- -5'
25033 3' -55.7 NC_005336.1 + 14457 0.66 0.876641
Target:  5'- -gCGCAGacagucguCCAGCACguCCGcguugUGCGCCCa -3'
miRNA:   3'- ugGUGUC--------GGUUGUGguGGU-----ACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 14608 0.66 0.869244
Target:  5'- gGCgGCAGCCAGCucuugcgcgcgAUCGCCucucgcagGCACgCCa -3'
miRNA:   3'- -UGgUGUCGGUUG-----------UGGUGGua------CGUG-GG- -5'
25033 3' -55.7 NC_005336.1 + 6113 0.66 0.876641
Target:  5'- cGCCGCGcagcGCCAGCuCCugCAcGCACa- -3'
miRNA:   3'- -UGGUGU----CGGUUGuGGugGUaCGUGgg -5'
25033 3' -55.7 NC_005336.1 + 58686 0.66 0.869244
Target:  5'- -gCAUGGCCAGCGgcggccCCGCgcgCGUGCACCg -3'
miRNA:   3'- ugGUGUCGGUUGU------GGUG---GUACGUGGg -5'
25033 3' -55.7 NC_005336.1 + 78054 0.66 0.872229
Target:  5'- gACCGCAucggcccuGCCGcgcgcucuggagcgcACGCUggugauGCCGUGCGCCUc -3'
miRNA:   3'- -UGGUGU--------CGGU---------------UGUGG------UGGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 28182 0.66 0.879537
Target:  5'- cGCgCACGGCCAGCGugaacguggacucgcUCACCAcgaUGUACUUg -3'
miRNA:   3'- -UG-GUGUCGGUUGU---------------GGUGGU---ACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 48447 0.66 0.883812
Target:  5'- uGCU-CGGCCAACGCCGgCGcGCAgCUg -3'
miRNA:   3'- -UGGuGUCGGUUGUGGUgGUaCGUgGG- -5'
25033 3' -55.7 NC_005336.1 + 51422 0.66 0.876641
Target:  5'- gGCgGC-GCCGACGaCGCCcgugGUGCACCUu -3'
miRNA:   3'- -UGgUGuCGGUUGUgGUGG----UACGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.