Results 21 - 40 of 95 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 25069 | 0.72 | 0.420172 |
Target: 5'- gUCAGugGCUCcggcgccugacggGGAGGUC-CGCUGCa -3' miRNA: 3'- aAGUUugCGAG-------------CCUCCGGcGCGACGa -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 69391 | 0.72 | 0.421057 |
Target: 5'- ---cGGCGCUCGGAGGacCCGCGCUuCg -3' miRNA: 3'- aaguUUGCGAGCCUCC--GGCGCGAcGa -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 53599 | 0.71 | 0.429966 |
Target: 5'- -gCGGGCGC-CGcGAGGCCGUGCUcaaGCUc -3' miRNA: 3'- aaGUUUGCGaGC-CUCCGGCGCGA---CGA- -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 61351 | 0.71 | 0.429966 |
Target: 5'- cUgGAACaGCUCGGuGGCCGaCGCgUGCa -3' miRNA: 3'- aAgUUUG-CGAGCCuCCGGC-GCG-ACGa -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 127638 | 0.71 | 0.438985 |
Target: 5'- aUCgAGACGCU-GGuGGCCGCcgGCUGCg -3' miRNA: 3'- aAG-UUUGCGAgCCuCCGGCG--CGACGa -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 130154 | 0.71 | 0.457342 |
Target: 5'- cUCGgacgcAGCGCUCGcGcaccAGGCCGCGCUcGCg -3' miRNA: 3'- aAGU-----UUGCGAGC-C----UCCGGCGCGA-CGa -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 53543 | 0.7 | 0.474209 |
Target: 5'- gUUCAAGCGCcccaccgaggaGGAGGCCGCGgUGg- -3' miRNA: 3'- -AAGUUUGCGag---------CCUCCGGCGCgACga -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 29511 | 0.7 | 0.476102 |
Target: 5'- -gCGGACGCUCcccucgucgGcGAGGCCGUGCUGg- -3' miRNA: 3'- aaGUUUGCGAG---------C-CUCCGGCGCGACga -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 124906 | 0.7 | 0.504935 |
Target: 5'- -cCAAcuGCGC-CGGAGGCgCGCGC-GCg -3' miRNA: 3'- aaGUU--UGCGaGCCUCCG-GCGCGaCGa -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 90244 | 0.7 | 0.514713 |
Target: 5'- -gCAGcgGCGCUCagucucGGGGCCGCcGCUGCa -3' miRNA: 3'- aaGUU--UGCGAGc-----CUCCGGCG-CGACGa -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 112070 | 0.7 | 0.524568 |
Target: 5'- ---cAGCGCUC-GAGGUCGCGgUGCUc -3' miRNA: 3'- aaguUUGCGAGcCUCCGGCGCgACGA- -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 100775 | 0.7 | 0.524568 |
Target: 5'- -cCAcGCGCUUcgaGGAGGUCGCGCgccgggGCUc -3' miRNA: 3'- aaGUuUGCGAG---CCUCCGGCGCGa-----CGA- -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 131973 | 0.69 | 0.534494 |
Target: 5'- aUCc-GCGCUacCGGAGGCCGUGC-GCc -3' miRNA: 3'- aAGuuUGCGA--GCCUCCGGCGCGaCGa -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 75968 | 0.69 | 0.534494 |
Target: 5'- -aCuuGCGCUCcauGGcGGCCGCGCgGCg -3' miRNA: 3'- aaGuuUGCGAG---CCuCCGGCGCGaCGa -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 135889 | 0.69 | 0.554536 |
Target: 5'- gUCuGGACGCgCGGcuGCCGCuGCUGCUg -3' miRNA: 3'- aAG-UUUGCGaGCCucCGGCG-CGACGA- -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 135892 | 0.69 | 0.564641 |
Target: 5'- --uGGACGCgCGGcuGCCGCuGCUGCUg -3' miRNA: 3'- aagUUUGCGaGCCucCGGCG-CGACGA- -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 41202 | 0.69 | 0.574794 |
Target: 5'- gUUCAgcAGCGCgacCGu-GGCCGCGUUGCUc -3' miRNA: 3'- -AAGU--UUGCGa--GCcuCCGGCGCGACGA- -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 43687 | 0.69 | 0.584988 |
Target: 5'- --uGGACGCgccGAGGCCGCGCguUGCg -3' miRNA: 3'- aagUUUGCGagcCUCCGGCGCG--ACGa -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 29122 | 0.68 | 0.595216 |
Target: 5'- cUCuAugGCggCGGuGGCCGCGCUcgaggGCUc -3' miRNA: 3'- aAGuUugCGa-GCCuCCGGCGCGA-----CGA- -5' |
|||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 69796 | 0.68 | 0.605472 |
Target: 5'- ---cGGCGCUCGGAcaaCGUGCUGCUg -3' miRNA: 3'- aaguUUGCGAGCCUccgGCGCGACGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home