miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 133656 1.05 0.002084
Target:  5'- gUUCAAACGCUCGGAGGCCGCGCUGCUg -3'
miRNA:   3'- -AAGUUUGCGAGCCUCCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 135955 0.84 0.063099
Target:  5'- -gCGGGCGCUCGGcGGCgGCGCUGCUg -3'
miRNA:   3'- aaGUUUGCGAGCCuCCGgCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 135955 0.84 0.063099
Target:  5'- -gCGGGCGCUCGGcGGCgGCGCUGCUg -3'
miRNA:   3'- aaGUUUGCGAGCCuCCGgCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 36247 0.78 0.171999
Target:  5'- -gCAcGCGCggCGGAGGCCGCGCUcgGCg -3'
miRNA:   3'- aaGUuUGCGa-GCCUCCGGCGCGA--CGa -5'
25035 5' -58.6 NC_005336.1 + 68377 0.78 0.180945
Target:  5'- -gCGGGCGC-CGGcGGCCGCGCUGUUc -3'
miRNA:   3'- aaGUUUGCGaGCCuCCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 47583 0.77 0.20513
Target:  5'- gUCGAacgucGCGUUCGaGGGcGCCGCGCUGCa -3'
miRNA:   3'- aAGUU-----UGCGAGC-CUC-CGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 128102 0.77 0.210291
Target:  5'- -gCGAuccGCGCcugcgaggCGGAGGUCGCGCUGCUg -3'
miRNA:   3'- aaGUU---UGCGa-------GCCUCCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 65320 0.76 0.232065
Target:  5'- --aAAGCGCUCguGGAGGagaCCGCGCUGCa -3'
miRNA:   3'- aagUUUGCGAG--CCUCC---GGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 124873 0.76 0.232065
Target:  5'- -aCAGGCGCUCGc-GGCCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGAGCcuCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 5697 0.75 0.249617
Target:  5'- -gCGAGCGCcgCGGAGGCCaGCGCgaGCg -3'
miRNA:   3'- aaGUUUGCGa-GCCUCCGG-CGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 118812 0.73 0.330855
Target:  5'- -aCAcuGACGCggCGGAGGCUGCGC-GCa -3'
miRNA:   3'- aaGU--UUGCGa-GCCUCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 107448 0.73 0.353986
Target:  5'- -gCGAGCGUgaCGGAGGCgCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGa-GCCUCCG-GCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 16244 0.73 0.353986
Target:  5'- gUCGAGCGcCUCGGGGuCCGCGCccGCg -3'
miRNA:   3'- aAGUUUGC-GAGCCUCcGGCGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 78903 0.73 0.361946
Target:  5'- -gCGGAUGCg-GGAGGUCGCGCgGCUg -3'
miRNA:   3'- aaGUUUGCGagCCUCCGGCGCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 10044 0.73 0.37003
Target:  5'- gUUCAGGCGCaCGGu-GCCGuCGCUGCUg -3'
miRNA:   3'- -AAGUUUGCGaGCCucCGGC-GCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 46141 0.72 0.386564
Target:  5'- -gCAGACGCgc-GAGGuCCGCGCUGUUg -3'
miRNA:   3'- aaGUUUGCGagcCUCC-GGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 61469 0.72 0.395011
Target:  5'- --uGGACGCggUGGAGGCCGUGCgucGCa -3'
miRNA:   3'- aagUUUGCGa-GCCUCCGGCGCGa--CGa -5'
25035 5' -58.6 NC_005336.1 + 131106 0.72 0.395011
Target:  5'- -gCAugcCGCUgCGGAGGCCGCGCgacgggGCc -3'
miRNA:   3'- aaGUuu-GCGA-GCCUCCGGCGCGa-----CGa -5'
25035 5' -58.6 NC_005336.1 + 67445 0.72 0.402715
Target:  5'- cUCAAccgcaacGCGCUCacagagauGGAcagcaccgacguGGCCGCGCUGCUa -3'
miRNA:   3'- aAGUU-------UGCGAG--------CCU------------CCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 135825 0.72 0.41226
Target:  5'- -cCGGACGCggCGGGgcggcugccgcuGGCgGCGCUGCUg -3'
miRNA:   3'- aaGUUUGCGa-GCCU------------CCGgCGCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.