miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 43687 0.69 0.584988
Target:  5'- --uGGACGCgccGAGGCCGCGCguUGCg -3'
miRNA:   3'- aagUUUGCGagcCUCCGGCGCG--ACGa -5'
25035 5' -58.6 NC_005336.1 + 61351 0.71 0.429966
Target:  5'- cUgGAACaGCUCGGuGGCCGaCGCgUGCa -3'
miRNA:   3'- aAgUUUG-CGAGCCuCCGGC-GCG-ACGa -5'
25035 5' -58.6 NC_005336.1 + 127638 0.71 0.438985
Target:  5'- aUCgAGACGCU-GGuGGCCGCcgGCUGCg -3'
miRNA:   3'- aAG-UUUGCGAgCCuCCGGCG--CGACGa -5'
25035 5' -58.6 NC_005336.1 + 53543 0.7 0.474209
Target:  5'- gUUCAAGCGCcccaccgaggaGGAGGCCGCGgUGg- -3'
miRNA:   3'- -AAGUUUGCGag---------CCUCCGGCGCgACga -5'
25035 5' -58.6 NC_005336.1 + 100775 0.7 0.524568
Target:  5'- -cCAcGCGCUUcgaGGAGGUCGCGCgccgggGCUc -3'
miRNA:   3'- aaGUuUGCGAG---CCUCCGGCGCGa-----CGA- -5'
25035 5' -58.6 NC_005336.1 + 75968 0.69 0.534494
Target:  5'- -aCuuGCGCUCcauGGcGGCCGCGCgGCg -3'
miRNA:   3'- aaGuuUGCGAG---CCuCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 131973 0.69 0.534494
Target:  5'- aUCc-GCGCUacCGGAGGCCGUGC-GCc -3'
miRNA:   3'- aAGuuUGCGA--GCCUCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 135889 0.69 0.554536
Target:  5'- gUCuGGACGCgCGGcuGCCGCuGCUGCUg -3'
miRNA:   3'- aAG-UUUGCGaGCCucCGGCG-CGACGA- -5'
25035 5' -58.6 NC_005336.1 + 41202 0.69 0.574794
Target:  5'- gUUCAgcAGCGCgacCGu-GGCCGCGUUGCUc -3'
miRNA:   3'- -AAGU--UUGCGa--GCcuCCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 53599 0.71 0.429966
Target:  5'- -gCGGGCGC-CGcGAGGCCGUGCUcaaGCUc -3'
miRNA:   3'- aaGUUUGCGaGC-CUCCGGCGCGA---CGA- -5'
25035 5' -58.6 NC_005336.1 + 69391 0.72 0.421057
Target:  5'- ---cGGCGCUCGGAGGacCCGCGCUuCg -3'
miRNA:   3'- aaguUUGCGAGCCUCC--GGCGCGAcGa -5'
25035 5' -58.6 NC_005336.1 + 67445 0.72 0.402715
Target:  5'- cUCAAccgcaacGCGCUCacagagauGGAcagcaccgacguGGCCGCGCUGCUa -3'
miRNA:   3'- aAGUU-------UGCGAG--------CCU------------CCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 36247 0.78 0.171999
Target:  5'- -gCAcGCGCggCGGAGGCCGCGCUcgGCg -3'
miRNA:   3'- aaGUuUGCGa-GCCUCCGGCGCGA--CGa -5'
25035 5' -58.6 NC_005336.1 + 68377 0.78 0.180945
Target:  5'- -gCGGGCGC-CGGcGGCCGCGCUGUUc -3'
miRNA:   3'- aaGUUUGCGaGCCuCCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 47583 0.77 0.20513
Target:  5'- gUCGAacgucGCGUUCGaGGGcGCCGCGCUGCa -3'
miRNA:   3'- aAGUU-----UGCGAGC-CUC-CGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 128102 0.77 0.210291
Target:  5'- -gCGAuccGCGCcugcgaggCGGAGGUCGCGCUGCUg -3'
miRNA:   3'- aaGUU---UGCGa-------GCCUCCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 65320 0.76 0.232065
Target:  5'- --aAAGCGCUCguGGAGGagaCCGCGCUGCa -3'
miRNA:   3'- aagUUUGCGAG--CCUCC---GGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 78903 0.73 0.361946
Target:  5'- -gCGGAUGCg-GGAGGUCGCGCgGCUg -3'
miRNA:   3'- aaGUUUGCGagCCUCCGGCGCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 10044 0.73 0.37003
Target:  5'- gUUCAGGCGCaCGGu-GCCGuCGCUGCUg -3'
miRNA:   3'- -AAGUUUGCGaGCCucCGGC-GCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 46141 0.72 0.386564
Target:  5'- -gCAGACGCgc-GAGGuCCGCGCUGUUg -3'
miRNA:   3'- aaGUUUGCGagcCUCC-GGCGCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.