miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 453 0.66 0.737654
Target:  5'- cUCGcgUGCcgCGGGcGGCCGCGCguccGCg -3'
miRNA:   3'- aAGUuuGCGa-GCCU-CCGGCGCGa---CGa -5'
25035 5' -58.6 NC_005336.1 + 453 0.66 0.737654
Target:  5'- cUCGcgUGCcgCGGGcGGCCGCGCguccGCg -3'
miRNA:   3'- aAGUuuGCGa-GCCU-CCGGCGCGa---CGa -5'
25035 5' -58.6 NC_005336.1 + 5697 0.75 0.249617
Target:  5'- -gCGAGCGCcgCGGAGGCCaGCGCgaGCg -3'
miRNA:   3'- aaGUUUGCGa-GCCUCCGG-CGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 6717 0.66 0.7571
Target:  5'- -gCAGGCGUUUGGGuucGcGCCGCGCUcgaGCa -3'
miRNA:   3'- aaGUUUGCGAGCCU---C-CGGCGCGA---CGa -5'
25035 5' -58.6 NC_005336.1 + 10044 0.73 0.37003
Target:  5'- gUUCAGGCGCaCGGu-GCCGuCGCUGCUg -3'
miRNA:   3'- -AAGUUUGCGaGCCucCGGC-GCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 13025 0.67 0.707811
Target:  5'- -aCAcGCGC-CGGgacAGGCCGCGUuuaUGCa -3'
miRNA:   3'- aaGUuUGCGaGCC---UCCGGCGCG---ACGa -5'
25035 5' -58.6 NC_005336.1 + 14090 0.66 0.727787
Target:  5'- cUCGcGCGCUCauGAGGCaCGUGCgGCa -3'
miRNA:   3'- aAGUuUGCGAGc-CUCCG-GCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 14992 0.67 0.687576
Target:  5'- -cCGAGCGC-CGGgccucGGGCuCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGaGCC-----UCCG-GCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 16244 0.73 0.353986
Target:  5'- gUCGAGCGcCUCGGGGuCCGCGCccGCg -3'
miRNA:   3'- aAGUUUGC-GAGCCUCcGGCGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 16381 0.66 0.747428
Target:  5'- aUCAcGAUGUgcgCGGAGacGCCGCGCcgGCUc -3'
miRNA:   3'- aAGU-UUGCGa--GCCUC--CGGCGCGa-CGA- -5'
25035 5' -58.6 NC_005336.1 + 16761 0.67 0.656897
Target:  5'- gUCGAAguUGCUCGcGAGGUCGCGgacgcggucuguCUGCg -3'
miRNA:   3'- aAGUUU--GCGAGC-CUCCGGCGC------------GACGa -5'
25035 5' -58.6 NC_005336.1 + 21642 0.67 0.677384
Target:  5'- gUCAAGCGcCUCGccGuGCUGCGgCUGCUg -3'
miRNA:   3'- aAGUUUGC-GAGCcuC-CGGCGC-GACGA- -5'
25035 5' -58.6 NC_005336.1 + 25069 0.72 0.420172
Target:  5'- gUCAGugGCUCcggcgccugacggGGAGGUC-CGCUGCa -3'
miRNA:   3'- aAGUUugCGAG-------------CCUCCGGcGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 29122 0.68 0.595216
Target:  5'- cUCuAugGCggCGGuGGCCGCGCUcgaggGCUc -3'
miRNA:   3'- aAGuUugCGa-GCCuCCGGCGCGA-----CGA- -5'
25035 5' -58.6 NC_005336.1 + 29511 0.7 0.476102
Target:  5'- -gCGGACGCUCcccucgucgGcGAGGCCGUGCUGg- -3'
miRNA:   3'- aaGUUUGCGAG---------C-CUCCGGCGCGACga -5'
25035 5' -58.6 NC_005336.1 + 36247 0.78 0.171999
Target:  5'- -gCAcGCGCggCGGAGGCCGCGCUcgGCg -3'
miRNA:   3'- aaGUuUGCGa-GCCUCCGGCGCGA--CGa -5'
25035 5' -58.6 NC_005336.1 + 38107 0.66 0.727787
Target:  5'- --gGAGCGCUCGcGcauGGCCGCGagcagcgcCUGCg -3'
miRNA:   3'- aagUUUGCGAGC-Cu--CCGGCGC--------GACGa -5'
25035 5' -58.6 NC_005336.1 + 39034 0.66 0.7571
Target:  5'- cUCucGCGCaaguacgCGGAGGCgGaGCUGCa -3'
miRNA:   3'- aAGuuUGCGa------GCCUCCGgCgCGACGa -5'
25035 5' -58.6 NC_005336.1 + 40454 0.67 0.687576
Target:  5'- -gCGcACGC-CGGAGGCgGCGCacGCa -3'
miRNA:   3'- aaGUuUGCGaGCCUCCGgCGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 41202 0.69 0.574794
Target:  5'- gUUCAgcAGCGCgacCGu-GGCCGCGUUGCUc -3'
miRNA:   3'- -AAGU--UUGCGa--GCcuCCGGCGCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.