miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25036 3' -62.3 NC_005336.1 + 132315 1.11 0.000652
Target:  5'- cGCCGGCUACCGGCUCACCGGCUCCGGc -3'
miRNA:   3'- -CGGCCGAUGGCCGAGUGGCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 55725 0.84 0.053984
Target:  5'- cGCCGGUUcccgcguguccugcGCCGGCUCccgcguguCCGGCUCCGGc -3'
miRNA:   3'- -CGGCCGA--------------UGGCCGAGu-------GGCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 41014 0.82 0.072132
Target:  5'- cGCCGcGUUcgACCGcCUCGCCGGCUCCGGc -3'
miRNA:   3'- -CGGC-CGA--UGGCcGAGUGGCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 20081 0.78 0.128643
Target:  5'- cGCgGGCUcGgCGGCUCGCCGGC-CUGGc -3'
miRNA:   3'- -CGgCCGA-UgGCCGAGUGGCCGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 55689 0.78 0.138514
Target:  5'- cGCCGGCguguCCGGCU--CCGGCUCCu- -3'
miRNA:   3'- -CGGCCGau--GGCCGAguGGCCGAGGcc -5'
25036 3' -62.3 NC_005336.1 + 133973 0.76 0.172418
Target:  5'- cGCCGGCUgGCCGcGCgcgcggCGCCGGCcUCGGc -3'
miRNA:   3'- -CGGCCGA-UGGC-CGa-----GUGGCCGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 68104 0.75 0.193388
Target:  5'- gGCCGGCggcccgaucacgGCgCGGCUgCGCC-GCUCCGGg -3'
miRNA:   3'- -CGGCCGa-----------UG-GCCGA-GUGGcCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 95990 0.75 0.194309
Target:  5'- aGCCGcGCg--CGGCUCGCCaGCUCUGGc -3'
miRNA:   3'- -CGGC-CGaugGCCGAGUGGcCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 93855 0.75 0.218594
Target:  5'- aCCGGCUGCCGGUcgACCuGGUgCCGGu -3'
miRNA:   3'- cGGCCGAUGGCCGagUGG-CCGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 118678 0.74 0.223752
Target:  5'- cGCCGuGCacGCCGGCgcgCAagcgcaaCGGCUCCGGc -3'
miRNA:   3'- -CGGC-CGa-UGGCCGa--GUg------GCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 136061 0.74 0.229013
Target:  5'- cGCCGGCUucccucACCGcGCcCGCCGcGCcCCGGg -3'
miRNA:   3'- -CGGCCGA------UGGC-CGaGUGGC-CGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 17676 0.74 0.229013
Target:  5'- uGCCGGacgaGCCGGCacgcgCGCCuGGCUCCGu -3'
miRNA:   3'- -CGGCCga--UGGCCGa----GUGG-CCGAGGCc -5'
25036 3' -62.3 NC_005336.1 + 136061 0.74 0.229013
Target:  5'- cGCCGGCUucccucACCGcGCcCGCCGcGCcCCGGg -3'
miRNA:   3'- -CGGCCGA------UGGC-CGaGUGGC-CGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 51684 0.73 0.268812
Target:  5'- gGCCGGgUGCCGGCgcucgCGCUGGa--CGGg -3'
miRNA:   3'- -CGGCCgAUGGCCGa----GUGGCCgagGCC- -5'
25036 3' -62.3 NC_005336.1 + 127840 0.73 0.268812
Target:  5'- cGCgCGGCUGCUGGC-CGCgGGCg-CGGa -3'
miRNA:   3'- -CG-GCCGAUGGCCGaGUGgCCGagGCC- -5'
25036 3' -62.3 NC_005336.1 + 45956 0.73 0.268812
Target:  5'- aCCGGCaGCCGGUcCACgGGCUCUaGGu -3'
miRNA:   3'- cGGCCGaUGGCCGaGUGgCCGAGG-CC- -5'
25036 3' -62.3 NC_005336.1 + 22425 0.73 0.281165
Target:  5'- cGCUGGUgcuggACCGcggggcGCUCACgCGGCUCuCGGa -3'
miRNA:   3'- -CGGCCGa----UGGC------CGAGUG-GCCGAG-GCC- -5'
25036 3' -62.3 NC_005336.1 + 99772 0.73 0.293964
Target:  5'- -gCGGCUGCUGGUgCGCCG-CUUCGGg -3'
miRNA:   3'- cgGCCGAUGGCCGaGUGGCcGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 36619 0.72 0.300532
Target:  5'- -aUGGCgccGCCGGCUUcuCgGGCUCCGGc -3'
miRNA:   3'- cgGCCGa--UGGCCGAGu-GgCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 122738 0.72 0.314006
Target:  5'- cCCGGCguccugagGCUGcGCUCGCCGGcCUgCGGc -3'
miRNA:   3'- cGGCCGa-------UGGC-CGAGUGGCC-GAgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.