Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25036 | 3' | -62.3 | NC_005336.1 | + | 74382 | 0.7 | 0.429253 |
Target: 5'- cGCCGuGCUcaccaccaccgACgGGCUCguggucgcguGCCGGCgCCGGu -3' miRNA: 3'- -CGGC-CGA-----------UGgCCGAG----------UGGCCGaGGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 122119 | 0.71 | 0.342312 |
Target: 5'- aGCCaGGCgcgcgUGCCGGCUCGuCCGGCaCCu- -3' miRNA: 3'- -CGG-CCG-----AUGGCCGAGU-GGCCGaGGcc -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 123750 | 0.71 | 0.34967 |
Target: 5'- uGCCGaGCUGCUcGC-CGCCGGCUgCGa -3' miRNA: 3'- -CGGC-CGAUGGcCGaGUGGCCGAgGCc -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 50224 | 0.71 | 0.34967 |
Target: 5'- cGCCGGg-ACgCGGCUCggaGCgGGCUCgGGa -3' miRNA: 3'- -CGGCCgaUG-GCCGAG---UGgCCGAGgCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 7481 | 0.71 | 0.372412 |
Target: 5'- cGCCGGa-GCCGGUgaGCCGGUagCCGGc -3' miRNA: 3'- -CGGCCgaUGGCCGagUGGCCGa-GGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 18074 | 0.7 | 0.388124 |
Target: 5'- cGCCGGCaguCCGcGCgcgagguccagCACCGGCguccacCCGGg -3' miRNA: 3'- -CGGCCGau-GGC-CGa----------GUGGCCGa-----GGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 123838 | 0.7 | 0.401816 |
Target: 5'- uGCCGGCgcUCGGUgcucgaccagcucaUCGCCGGCggCgCGGa -3' miRNA: 3'- -CGGCCGauGGCCG--------------AGUGGCCGa-G-GCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 48113 | 0.7 | 0.404264 |
Target: 5'- -gCGGCUGCgcaugCGGUgCGCCGGCgcgcuugCCGGg -3' miRNA: 3'- cgGCCGAUG-----GCCGaGUGGCCGa------GGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 44148 | 0.7 | 0.412492 |
Target: 5'- gGCCGacgcGCUGCCGGCggcCACgGG-UCUGGg -3' miRNA: 3'- -CGGC----CGAUGGCCGa--GUGgCCgAGGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 122738 | 0.72 | 0.314006 |
Target: 5'- cCCGGCguccugagGCUGcGCUCGCCGGcCUgCGGc -3' miRNA: 3'- cGGCCGa-------UGGC-CGAGUGGCC-GAgGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 36619 | 0.72 | 0.300532 |
Target: 5'- -aUGGCgccGCCGGCUUcuCgGGCUCCGGc -3' miRNA: 3'- cgGCCGa--UGGCCGAGu-GgCCGAGGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 99772 | 0.73 | 0.293964 |
Target: 5'- -gCGGCUGCUGGUgCGCCG-CUUCGGg -3' miRNA: 3'- cgGCCGAUGGCCGaGUGGCcGAGGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 68104 | 0.75 | 0.193388 |
Target: 5'- gGCCGGCggcccgaucacgGCgCGGCUgCGCC-GCUCCGGg -3' miRNA: 3'- -CGGCCGa-----------UG-GCCGA-GUGGcCGAGGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 95990 | 0.75 | 0.194309 |
Target: 5'- aGCCGcGCg--CGGCUCGCCaGCUCUGGc -3' miRNA: 3'- -CGGC-CGaugGCCGAGUGGcCGAGGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 93855 | 0.75 | 0.218594 |
Target: 5'- aCCGGCUGCCGGUcgACCuGGUgCCGGu -3' miRNA: 3'- cGGCCGAUGGCCGagUGG-CCGaGGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 118678 | 0.74 | 0.223752 |
Target: 5'- cGCCGuGCacGCCGGCgcgCAagcgcaaCGGCUCCGGc -3' miRNA: 3'- -CGGC-CGa-UGGCCGa--GUg------GCCGAGGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 136061 | 0.74 | 0.229013 |
Target: 5'- cGCCGGCUucccucACCGcGCcCGCCGcGCcCCGGg -3' miRNA: 3'- -CGGCCGA------UGGC-CGaGUGGC-CGaGGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 51684 | 0.73 | 0.268812 |
Target: 5'- gGCCGGgUGCCGGCgcucgCGCUGGa--CGGg -3' miRNA: 3'- -CGGCCgAUGGCCGa----GUGGCCgagGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 127840 | 0.73 | 0.268812 |
Target: 5'- cGCgCGGCUGCUGGC-CGCgGGCg-CGGa -3' miRNA: 3'- -CG-GCCGAUGGCCGaGUGgCCGagGCC- -5' |
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25036 | 3' | -62.3 | NC_005336.1 | + | 22425 | 0.73 | 0.281165 |
Target: 5'- cGCUGGUgcuggACCGcggggcGCUCACgCGGCUCuCGGa -3' miRNA: 3'- -CGGCCGa----UGGC------CGAGUG-GCCGAG-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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